RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 RNASE12Q5GAN4 147 aaKnown RBP8.86□□□□□ -0.99
YBX3-208ENST00000540447 USP17L1Q7RTZ2 530 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 SNX20Q7Z614 316 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 TMEM17Q86X19 198 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 ATPAF2Q8N5M1 289 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PDGFCQ9NRA1 345 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 C2orf71A6NGG8 1288 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 A6NHS1 94 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PGLSO95336 258 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 FAUP35544 74 aaKnown RBP8.86□□□□□ -0.99
YBX3-208ENST00000540447 TRIM23P36406 574 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 SLC15A1P46059 708 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 RAD51Q06609 339 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 NAB1Q13506 487 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 KRT33BQ14525 404 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 NR6A1Q15406 480 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 MFSD5Q6N075 450 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.86□□□□□ -0.99
YBX3-208ENST00000540447 LINC00523Q86TU6 105 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 IPMKQ8NFU5 416 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 LRTOMTQ8WZ04 291 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PMEPA1Q969W9 287 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PPP1R2P1Q96PQ5 205 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 DNAJC18Q9H819 358 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PTPRHQ9HD43 1115 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 DHRS7Q9Y394 339 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 A0A096LPK6 155 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 TRDMT1O14717 391 aaKnown RBP8.86□□□□□ -0.99
YBX3-208ENST00000540447 OR6B1O95007 311 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 SNAP29O95721 258 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 ANGPTL1O95841 491 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 ATXN8OSP0DMR3 200 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 HMGB2P26583 209 aaKnown RBP8.86□□□□□ -0.99
YBX3-208ENST00000540447 ABCG1P45844 678 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 HSD17B4P51659 736 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 NKX2-5P52952 324 aaPredicted RBP8.86□□□□□ -0.99
YBX3-208ENST00000540447 ACTR3P61158 418 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PDSS2Q86YH6 399 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 C3orf58Q8NDZ4 430 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 SNX27Q96L92 541 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 MAP3K14Q99558 947 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 SLC52A2Q9HAB3 445 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PCDHB16Q9NRJ7 776 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 LATS2Q9NRM7 1088 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.86□□□□□ -0.99
YBX3-208ENST00000540447 EGFL7Q9UHF1 273 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 IRAK3Q9Y616 596 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 XDHP47989 1333 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 MAGI1Q96QZ7 1491 aaPredicted RBP8.86□□□□□ -0.99
YBX3-208ENST00000540447 AP3D1O14617 1153 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 SGPL1O95470 568 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 CLUP10909 449 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 BTDP43251 543 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 STT3AP46977 705 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 RGS4P49798 205 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PLEKHG4Q58EX7 1191 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 FGD3Q5JSP0 725 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 HECTD3Q5T447 861 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PRR5LQ6MZQ0 368 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 OXR1Q8N573 874 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 FNDC5Q8NAU1 212 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 OR2T34Q8NGX1 318 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 OR2T3Q8NH03 318 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 TLCD1Q96CP7 247 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PHF21BQ96EK2 531 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 ANKRD6Q9Y2G4 727 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 BTBD19C9JJ37 291 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 FAM86B2P0C5J1 330 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 GZMAP12544 262 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 MATN1P21941 496 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 CDH18Q13634 790 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 EMC2Q15006 297 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 CYB5RLQ6IPT4 315 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 DSELQ8IZU8 1212 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 SRFBP1Q8NEF9 429 aaKnown RBP8.86□□□□□ -0.99
YBX3-208ENST00000540447 MOSPD2Q8NHP6 518 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 DNAJB14Q8TBM8 379 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 SMG7Q92540 1137 aaKnown RBP8.86□□□□□ -0.99
YBX3-208ENST00000540447 BIRC8Q96P09 236 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PPP1R16BQ96T49 567 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 KATNAL1Q9BW62 490 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 DSN1Q9H410 356 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 NMRAL1Q9HBL8 299 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 TBC1D13Q9NVG8 400 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 PRKAB1Q9Y478 270 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 ALG5Q9Y673 324 aa8.86□□□□□ -0.99
YBX3-208ENST00000540447 EDC4Q6P2E9 1401 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 NCAM2O15394 837 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 DYRK3O43781 588 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 NCK1P16333 377 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 ERP29P30040 261 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 SULT1E1P49888 294 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CAMK1Q14012 370 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 FBXO42Q6P3S6 717 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CXXC5Q7LFL8 322 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 TMEM132CQ8N3T6 1108 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CAMKK2Q96RR4 588 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 APOL5Q9BWW9 433 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 RBAKQ9NYW8 714 aaPredicted RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 TMEM9Q9P0T7 183 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms