RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 GNA12Q03113 381 aa15.05■□□□□ -0
VPS28-215ENST00000531924 ILKQ13418 452 aa15.05■□□□□ -0
VPS28-215ENST00000531924 SYCP1Q15431 976 aa15.05■□□□□ -0
VPS28-215ENST00000531924 CDO1Q16878 200 aa15.05■□□□□ -0
VPS28-215ENST00000531924 DPY19L2P1Q6NXN4 242 aa15.05■□□□□ -0
VPS28-215ENST00000531924 FBXL19Q6PCT2 694 aa15.05■□□□□ -0
VPS28-215ENST00000531924 ARCQ7LC44 396 aa15.05■□□□□ -0
VPS28-215ENST00000531924 PCDH20Q8N6Y1 951 aaKnown RBP15.05■□□□□ -0
VPS28-215ENST00000531924 EMC1Q8N766 993 aa15.05■□□□□ -0
VPS28-215ENST00000531924 ANKRD20A12PQ8NF67 263 aa15.05■□□□□ -0
VPS28-215ENST00000531924 ARRDC3Q96B67 414 aa15.05■□□□□ -0
VPS28-215ENST00000531924 NXPE2Q96DL1 559 aa15.05■□□□□ -0
VPS28-215ENST00000531924 HDAC8Q9BY41 377 aa15.05■□□□□ -0
VPS28-215ENST00000531924 CEP44Q9C0F1 390 aa15.05■□□□□ -0
VPS28-215ENST00000531924 FAM207AQ9NSI2 230 aaPredicted RBP15.05■□□□□ -0
VPS28-215ENST00000531924 TMEM59LQ9UK28 342 aa15.05■□□□□ -0
VPS28-215ENST00000531924 HPCAL4Q9UM19 191 aa15.05■□□□□ -0
VPS28-215ENST00000531924 CA5BQ9Y2D0 317 aa15.05■□□□□ -0
VPS28-215ENST00000531924 PLXNA2O75051 1894 aa15.05■□□□□ -0
VPS28-215ENST00000531924 TMEM131Q92545 1883 aa15.04■□□□□ -0
VPS28-215ENST00000531924 LEFTY1O75610 366 aa15.04■□□□□ -0
VPS28-215ENST00000531924 GLDCP23378 1020 aa15.04■□□□□ -0
VPS28-215ENST00000531924 ACADVLP49748 655 aa15.04■□□□□ -0
VPS28-215ENST00000531924 SERPINH1P50454 418 aaKnown RBP15.04■□□□□ -0
VPS28-215ENST00000531924 NEK3P51956 506 aa15.04■□□□□ -0
VPS28-215ENST00000531924 GEMIN4P57678 1058 aaKnown RBP15.04■□□□□ -0
VPS28-215ENST00000531924 POLR2FP61218 127 aaKnown RBP15.04■□□□□ -0
VPS28-215ENST00000531924 DAB2P98082 770 aa15.04■□□□□ -0
VPS28-215ENST00000531924 MAPK8IP2Q13387 824 aaPredicted RBP15.04■□□□□ -0
VPS28-215ENST00000531924 COL28A1Q2UY09 1125 aa15.04■□□□□ -0
VPS28-215ENST00000531924 ZNF284Q2VY69 593 aa15.04■□□□□ -0
VPS28-215ENST00000531924 CARD16Q5EG05 197 aa15.04■□□□□ -0
VPS28-215ENST00000531924 SFMBT2Q5VUG0 894 aa15.04■□□□□ -0
VPS28-215ENST00000531924 TRIM72Q6ZMU5 477 aa15.04■□□□□ -0
VPS28-215ENST00000531924 DPY19L3Q6ZPD9 716 aa15.04■□□□□ -0
VPS28-215ENST00000531924 PHLDB2Q86SQ0 1253 aa15.04■□□□□ -0
VPS28-215ENST00000531924 ENOX1Q8TC92 643 aaKnown RBP15.04■□□□□ -0
VPS28-215ENST00000531924 SLC20A1Q8WUM9 679 aa15.04■□□□□ -0
VPS28-215ENST00000531924 FEM1CQ96JP0 617 aa15.04■□□□□ -0
VPS28-215ENST00000531924 HEPHQ9BQS7 1158 aa15.04■□□□□ -0
VPS28-215ENST00000531924 FZD3Q9NPG1 666 aa15.04■□□□□ -0
VPS28-215ENST00000531924 NLRC4Q9NPP4 1024 aa15.04■□□□□ -0
VPS28-215ENST00000531924 KLHL11Q9NVR0 708 aa15.04■□□□□ -0
VPS28-215ENST00000531924 PPARGC1AQ9UBK2 798 aaKnown RBP15.04■□□□□ -0
VPS28-215ENST00000531924 OR12D3Q9UGF7 316 aa15.04■□□□□ -0
VPS28-215ENST00000531924 AK5Q9Y6K8 562 aa15.04■□□□□ -0
VPS28-215ENST00000531924 ZFYVE26Q68DK2 2539 aa15.04■□□□□ -0
VPS28-215ENST00000531924 WDFY3Q8IZQ1 3526 aa15.03■□□□□ -0
VPS28-215ENST00000531924 NEMP1O14524 444 aa15.03■□□□□ -0
VPS28-215ENST00000531924 ALPPL2P10696 532 aa15.03■□□□□ -0
VPS28-215ENST00000531924 MMP8P22894 467 aa15.03■□□□□ -0
VPS28-215ENST00000531924 ADRA1BP35368 520 aa15.03■□□□□ -0
VPS28-215ENST00000531924 SOX5P35711 763 aa15.03■□□□□ -0
VPS28-215ENST00000531924 STAT1P42224 750 aa15.03■□□□□ -0
VPS28-215ENST00000531924 NSFP46459 744 aaKnown RBP15.03■□□□□ -0
VPS28-215ENST00000531924 RPS21P63220 83 aaKnown RBP15.03■□□□□ -0
VPS28-215ENST00000531924 TARDBPQ13148 414 aaKnown RBP eCLIP15.03■□□□□ -0
VPS28-215ENST00000531924 SGCGQ13326 291 aa15.03■□□□□ -0
VPS28-215ENST00000531924 ZNF211Q13398 564 aaPredicted RBP15.03■□□□□ -0
VPS28-215ENST00000531924 CAMK2BQ13554 666 aa15.03■□□□□ -0
VPS28-215ENST00000531924 POLD3Q15054 466 aaPredicted RBP15.03■□□□□ -0
VPS28-215ENST00000531924 HES3Q5TGS1 186 aa15.03■□□□□ -0
VPS28-215ENST00000531924 PDZD3Q86UT5 571 aa15.03■□□□□ -0
VPS28-215ENST00000531924 ZNF354CQ86Y25 554 aa15.03■□□□□ -0
VPS28-215ENST00000531924 SLC30A5Q8TAD4 765 aa15.03■□□□□ -0
VPS28-215ENST00000531924 FAM174AQ8TBP5 190 aa15.03■□□□□ -0
VPS28-215ENST00000531924 RXFP2Q8WXD0 754 aa15.03■□□□□ -0
VPS28-215ENST00000531924 LRIG1Q96JA1 1093 aa15.03■□□□□ -0
VPS28-215ENST00000531924 DCBLD2Q96PD2 775 aa15.03■□□□□ -0
VPS28-215ENST00000531924 C11orf70Q9BRQ4 267 aa15.03■□□□□ -0
VPS28-215ENST00000531924 ZDHHC6Q9H6R6 413 aa15.03■□□□□ -0
VPS28-215ENST00000531924 SEPT11Q9NVA2 429 aaKnown RBP15.03■□□□□ -0
VPS28-215ENST00000531924 HECAQ9UBI9 543 aaPredicted RBP15.03■□□□□ -0
VPS28-215ENST00000531924 IPO11Q9UI26 975 aaKnown RBP15.03■□□□□ -0
VPS28-215ENST00000531924 NOCTQ9UK39 431 aaKnown RBP15.03■□□□□ -0
VPS28-215ENST00000531924 ANKRD62A6NC57 917 aa15.02■□□□□ -0
VPS28-215ENST00000531924 FFAR2O15552 330 aa15.02■□□□□ -0
VPS28-215ENST00000531924 SIGLEC6O43699 453 aa15.02■□□□□ -0
VPS28-215ENST00000531924 RHOQP17081 205 aa15.02■□□□□ -0
VPS28-215ENST00000531924 ITGB7P26010 798 aa15.02■□□□□ -0
VPS28-215ENST00000531924 CCNHP51946 323 aaPredicted RBP15.02■□□□□ -0
VPS28-215ENST00000531924 CLDN6P56747 220 aa15.02■□□□□ -0
VPS28-215ENST00000531924 CLDN2P57739 230 aa15.02■□□□□ -0
VPS28-215ENST00000531924 KRT31Q15323 416 aa15.02■□□□□ -0
VPS28-215ENST00000531924 C15orf59Q2T9L4 293 aaPredicted RBP15.02■□□□□ -0
VPS28-215ENST00000531924 SEL1L3Q68CR1 1132 aa15.02■□□□□ -0
VPS28-215ENST00000531924 KIAA1161Q6NSJ0 714 aa15.02■□□□□ -0
VPS28-215ENST00000531924 TRNP1Q6NT89 227 aa15.02■□□□□ -0
VPS28-215ENST00000531924 PTAR1Q7Z6K3 402 aaPredicted RBP15.02■□□□□ -0
VPS28-215ENST00000531924 DCP2Q8IU60 420 aaKnown RBP15.02■□□□□ -0
VPS28-215ENST00000531924 TMEM145Q8NBT3 493 aa15.02■□□□□ -0
VPS28-215ENST00000531924 TSC1Q92574 1164 aa15.02■□□□□ -0
VPS28-215ENST00000531924 GANQ9H2C0 597 aa15.02■□□□□ -0
VPS28-215ENST00000531924 RETREG1Q9H6L5 497 aa15.02■□□□□ -0
VPS28-215ENST00000531924 SCUBE2Q9NQ36 999 aa15.02■□□□□ -0
VPS28-215ENST00000531924 EVA1BQ9NVM1 165 aa15.02■□□□□ -0
VPS28-215ENST00000531924 ADAM22Q9P0K1 906 aa15.02■□□□□ -0
VPS28-215ENST00000531924 DNAI1Q9UI46 699 aa15.02■□□□□ -0
VPS28-215ENST00000531924 FCF1Q9Y324 198 aaKnown RBP15.02■□□□□ -0
VPS28-215ENST00000531924 DAAM1Q9Y4D1 1078 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms