RNA–Protein interactions for RNA: ENST00000491629.5

USF1-206, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 933 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-206ENST00000491629 ACADSBP45954 432 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 GCNT1Q02742 428 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 KCNC4Q03721 635 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 CLN3Q13286 438 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 ALFQ53S48 1182 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 RABGAP1LQ5R372 815 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 ZNF658Q5TYW1 1059 aaPredicted RBP13.54□□□□□ -0.24
USF1-206ENST00000491629 ZNF683Q8IZ20 524 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 DEFB106AQ8N104 65 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 WDTC1Q8N5D0 677 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 ABCG4Q9H172 646 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 THAP9Q9H5L6 903 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 USP29Q9HBJ7 922 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 DDIT4Q9NX09 232 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 VPS51Q9UID3 782 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 VPS28Q9UK41 221 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 HS3ST3A1Q9Y663 406 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 WASF2Q9Y6W5 498 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 NBASA2RRP1 2371 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 LRRK2Q5S007 2527 aa13.54□□□□□ -0.24
USF1-206ENST00000491629 ARHGEF17Q96PE2 2063 aaPredicted RBP13.54□□□□□ -0.24
USF1-206ENST00000491629 ANKRD36A6QL64 1941 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 UTP20O75691 2785 aaKnown RBP13.53□□□□□ -0.24
USF1-206ENST00000491629 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.53□□□□□ -0.24
USF1-206ENST00000491629 SPTY2D1-AS1A0A0U1RR47 76 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 GRAP2O75791 330 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 PCDH8O95206 1070 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 CSF2P04141 144 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 ALPPL2P10696 532 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 NME1P15531 152 aaKnown RBP13.53□□□□□ -0.24
USF1-206ENST00000491629 CCR1P32246 355 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 KRT85P78386 507 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 ZNF177Q13360 481 aaPredicted RBP13.53□□□□□ -0.24
USF1-206ENST00000491629 DEFB133Q30KQ1 61 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 LINC00303Q3SY05 128 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 HS1BP3Q53T59 392 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 ARSIQ5FYB1 569 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 LINGO4Q6UY18 593 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 ERN2Q76MJ5 926 aaKnown RBP13.53□□□□□ -0.24
USF1-206ENST00000491629 EFL1Q7Z2Z2 1120 aaKnown RBP13.53□□□□□ -0.24
USF1-206ENST00000491629 PTAR1Q7Z6K3 402 aaPredicted RBP13.53□□□□□ -0.24
USF1-206ENST00000491629 EHBP1Q8NDI1 1231 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 SPATA20Q8TB22 786 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 ZNF606Q8WXB4 792 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 VOPP1Q96AW1 172 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 CPXM1Q96SM3 734 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 KLF6Q99612 283 aaPredicted RBP13.53□□□□□ -0.24
USF1-206ENST00000491629 TSG101Q99816 390 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 HDAC8Q9BY41 377 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 SLC17A9Q9BYT1 436 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 TCEAL2Q9H3H9 227 aaPredicted RBP13.53□□□□□ -0.24
USF1-206ENST00000491629 FAM204AQ9H8W3 233 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 SNX10Q9Y5X0 201 aa13.53□□□□□ -0.24
USF1-206ENST00000491629 TEX15Q9BXT5 2789 aa13.52□□□□□ -0.24
USF1-206ENST00000491629 SPENQ96T58 3664 aaKnown RBP13.52□□□□□ -0.25
USF1-206ENST00000491629 A0A0D9SEW6 157 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 CPED1A4D0V7 1026 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 EME2A4GXA9 379 aaPredicted RBP13.52□□□□□ -0.25
USF1-206ENST00000491629 NEMP2A6NFY4 417 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 A6NNZ2 444 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 PAGE1O75459 146 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 CLDN11O75508 207 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 GCATO75600 419 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 PAK4O96013 591 aaPredicted RBP13.52□□□□□ -0.25
USF1-206ENST00000491629 TFE3P19532 575 aaPredicted RBP13.52□□□□□ -0.25
USF1-206ENST00000491629 DUSP3P51452 185 aaPredicted RBP13.52□□□□□ -0.25
USF1-206ENST00000491629 OXCT1P55809 520 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 HNRNPKP61978 463 aaKnown RBP eCLIP13.52□□□□□ -0.25
USF1-206ENST00000491629 LRRC63Q05C16 580 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 EIF2B5Q13144 721 aaKnown RBP13.52□□□□□ -0.25
USF1-206ENST00000491629 SRSF6Q13247 344 aaKnown RBP13.52□□□□□ -0.25
USF1-206ENST00000491629 PDCLQ13371 301 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 MEA1Q16626 185 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 ARL13BQ3SXY8 428 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 ZCCHC8Q6NZY4 707 aaKnown RBP13.52□□□□□ -0.25
USF1-206ENST00000491629 KYAT3Q6YP21 454 aaKnown RBP13.52□□□□□ -0.25
USF1-206ENST00000491629 DPY19L3Q6ZPD9 716 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 CLEC14AQ86T13 490 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 FMR1NBQ8N0W7 255 aaPredicted RBP13.52□□□□□ -0.25
USF1-206ENST00000491629 GRIN3AQ8TCU5 1115 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 DUSP23Q9BVJ7 150 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 MUC3BQ9H195 1237 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 TNKS2Q9H2K2 1166 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 GDPD2Q9HCC8 539 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 SLC12A6Q9UHW9 1150 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 PCDHGA8Q9Y5G5 932 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 CSNK1G3Q9Y6M4 447 aa13.52□□□□□ -0.25
USF1-206ENST00000491629 BECN2A8MW95 431 aa13.51□□□□□ -0.25
USF1-206ENST00000491629 AQP9O43315 295 aa13.51□□□□□ -0.25
USF1-206ENST00000491629 NOBOXO60393 691 aa13.51□□□□□ -0.25
USF1-206ENST00000491629 LEFTY1O75610 366 aa13.51□□□□□ -0.25
USF1-206ENST00000491629 LETM1O95202 739 aaPredicted RBP13.51□□□□□ -0.25
USF1-206ENST00000491629 ADCY5O95622 1261 aa13.51□□□□□ -0.25
USF1-206ENST00000491629 SLC2A3P11169 496 aa13.51□□□□□ -0.25
USF1-206ENST00000491629 RBMS1P29558 406 aaKnown RBP13.51□□□□□ -0.25
USF1-206ENST00000491629 CDH4P55283 916 aa13.51□□□□□ -0.25
USF1-206ENST00000491629 CDK17Q00537 523 aa13.51□□□□□ -0.25
USF1-206ENST00000491629 MAPK8IP2Q13387 824 aaPredicted RBP13.51□□□□□ -0.25
USF1-206ENST00000491629 C22orf39Q6P5X5 142 aa13.51□□□□□ -0.25
USF1-206ENST00000491629 FOXR1Q6PIV2 292 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms