RNA–Protein interactions for RNA: ENST00000485567.1

FN1-222, Transcript of fibronectin 1, human

TSL 1 (best)

Gene FN1, Length 584 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FN1-222	ENST00000485567	HSPB7	Q9UBY9	170 aa		4.36	□□□□□ -1.71
FN1-222	ENST00000485567	IPO11	Q9UI26	975 aa	Known RBP	4.36	□□□□□ -1.71
FN1-222	ENST00000485567	VPS28	Q9UK41	221 aa		4.36	□□□□□ -1.71
FN1-222	ENST00000485567	FBXO4	Q9UKT5	387 aa		4.36	□□□□□ -1.71
FN1-222	ENST00000485567	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
FN1-222	ENST00000485567	MST1R	Q04912	1400 aa		4.36	□□□□□ -1.71
FN1-222	ENST00000485567	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	SMIM22	K7EJ46	135 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	INPPL1	O15357	1258 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	MSI1	O43347	362 aa	Known RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	ZNF500	O60304	480 aa	Predicted RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	TMCC2	O75069	709 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	FZD7	O75084	574 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	DDAH2	O95865	285 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	CD63	P08962	238 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	NHLRC4	P0CG21	123 aa	Predicted RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	ST6GAL1	P15907	406 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	TNFRSF1A	P19438	455 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	ICAM3	P32942	547 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	RAD52	P43351	418 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	PTPN9	P43378	593 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	GABRB2	P47870	512 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	CYP2J2	P51589	502 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	TUBA4A	P68366	448 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	NUCB1	Q02818	461 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	ARL13A	Q5H913	290 aa	Predicted RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	EARS2	Q5JPH6	523 aa	Known RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	PRAMEF17	Q5VTA0	474 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	ATG9B	Q674R7	924 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	MRGPRG	Q86SM5	289 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	PDILT	Q8N807	584 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	ARL14EP	Q8N8R7	260 aa	Predicted RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	DNAAF1	Q8NEP3	725 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	WIPF2	Q8TF74	440 aa	Predicted RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	TMEM170A	Q8WVE7	144 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	FAR1	Q8WVX9	515 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	FAM149B1	Q96BN6	582 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	CLMN	Q96JQ2	1002 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	KLHL15	Q96M94	604 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	MAP7D2	Q96T17	732 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	PIP5K1A	Q99755	562 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	SLC32A1	Q9H598	525 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	PRKRIP1	Q9H875	184 aa	Predicted RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	SMYD2	Q9NRG4	433 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	SEPT11	Q9NVA2	429 aa	Known RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	BABAM1	Q9NWV8	329 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	EHD2	Q9NZN4	543 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	KIAA1456	Q9P272	454 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	TBC1D29	Q9UFV1	150 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	LIMA1	Q9UHB6	759 aa	Known RBP	4.35	□□□□□ -1.71
FN1-222	ENST00000485567	SLCO3A1	Q9UIG8	710 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	CDH22	Q9UJ99	828 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	INSL6	Q9Y581	213 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	AOX1	Q06278	1338 aa		4.35	□□□□□ -1.71
FN1-222	ENST00000485567	LIPT2	A6NK58	231 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	TTC36	A6NLP5	189 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	AP3D1	O14617	1153 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	LDLRAD4	O15165	306 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	RAMP2	O60895	175 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	TACC1	O75410	805 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	CBX6	O95503	412 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	NFATC1	O95644	943 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	IL1A	P01583	271 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	EIF2S1	P05198	315 aa	Known RBP	4.34	□□□□□ -1.71
FN1-222	ENST00000485567	HEXA	P06865	529 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	TACR2	P21452	398 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	CD72	P21854	359 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	NFKBIA	P25963	317 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	TM4SF1	P30408	202 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	CPA2	P48052	419 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	YWHAZ	P63104	245 aa	Known RBP	4.34	□□□□□ -1.71
FN1-222	ENST00000485567	OLR1	P78380	273 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	TMEM115	Q12893	351 aa	Predicted RBP	4.34	□□□□□ -1.71
FN1-222	ENST00000485567	ACVR2B	Q13705	512 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	GALNT3	Q14435	633 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	EDRF1	Q3B7T1	1238 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	SERTAD4-AS1	Q5TG53	156 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	FCRLB	Q6BAA4	426 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	NCEH1	Q6PIU2	408 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	SLC46A3	Q7Z3Q1	461 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	FAM160B2	Q86V87	743 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	IGFN1	Q86VF2	1251 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	LDLRAD3	Q86YD5	345 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	CNTROB	Q8N137	903 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	4.34	□□□□□ -1.71
FN1-222	ENST00000485567	ARHGEF2	Q92974	986 aa	Known RBP	4.34	□□□□□ -1.71
FN1-222	ENST00000485567	C20orf141	Q9NUB4	165 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	NKIRAS2	Q9NYR9	191 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	NCKIPSD	Q9NZQ3	722 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	SLC8A2	Q9UPR5	921 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	PCDHGB5	Q9Y5G0	923 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	HS3ST3A1	Q9Y663	406 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	KCNE2	Q9Y6J6	123 aa		4.34	□□□□□ -1.71
FN1-222	ENST00000485567	PASK	Q96RG2	1323 aa		4.33	□□□□□ -1.72
FN1-222	ENST00000485567	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	4.33	□□□□□ -1.72
FN1-222	ENST00000485567	CYP2D7	A0A087X1C5	515 aa		4.33	□□□□□ -1.72
FN1-222	ENST00000485567	SLC22A23	A1A5C7	686 aa		4.33	□□□□□ -1.72
FN1-222	ENST00000485567	TARSL2	A2RTX5	802 aa	Known RBP	4.33	□□□□□ -1.72
FN1-222	ENST00000485567	CXorf65	A6NEN9	183 aa		4.33	□□□□□ -1.72
FN1-222	ENST00000485567	FAM157A	C9JC47	383 aa		4.33	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 59 ms