RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 MRPL57Q9BQC6 102 aaKnown RBP14.84□□□□□ -0.03
HDAC6-220ENST00000477528 VRTNQ9H8Y1 702 aa14.84□□□□□ -0.03
HDAC6-220ENST00000477528 SLC45A1Q9Y2W3 748 aa14.84□□□□□ -0.03
HDAC6-220ENST00000477528 GSC2O15499 205 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 KRT36O76013 467 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 SEC24DO94855 1032 aaPredicted RBP14.83□□□□□ -0.03
HDAC6-220ENST00000477528 METTL18O95568 372 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 C2P06681 752 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 COX4I1P13073 169 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 RAG1P15918 1043 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 TUFMP49411 452 aaKnown RBP14.83□□□□□ -0.03
HDAC6-220ENST00000477528 CLCNKBP51801 687 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 GPX6P59796 221 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 KCNJ11Q14654 390 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 TMEM259Q4ZIN3 620 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 MON1AQ86VX9 555 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 FBXO39Q8N4B4 442 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 GDPD5Q8WTR4 605 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 PCED1BQ96HM7 432 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 FBXO5Q9UKT4 447 aa14.83□□□□□ -0.03
HDAC6-220ENST00000477528 DUSP11O75319 330 aaKnown RBP14.83□□□□□ -0.04
HDAC6-220ENST00000477528 NDUFV1P49821 464 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 PLK1P53350 603 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 NME5P56597 212 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 RGMBQ6NW40 437 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 CASS4Q9NQ75 786 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 COPG2Q9UBF2 871 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 WARS2Q9UGM6 360 aaKnown RBP14.83□□□□□ -0.04
HDAC6-220ENST00000477528 SNX13Q9Y5W8 968 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 KIAA1551Q9HCM1 1747 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 USP1O94782 785 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 MARK2Q7KZI7 788 aaKnown RBP14.83□□□□□ -0.04
HDAC6-220ENST00000477528 MYO1HQ8N1T3 1032 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 MRPS31Q92665 395 aaKnown RBP14.83□□□□□ -0.04
HDAC6-220ENST00000477528 CNBD2Q96M20 576 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 LPIN3Q9BQK8 851 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 TXLNGYQ9BZA5 131 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 HAPLN2Q9GZV7 340 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 PNPOQ9NVS9 261 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 LMCD1Q9NZU5 365 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 CNTN3Q9P232 1028 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 SFMBT1Q9UHJ3 866 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 CCDC166P0CW27 439 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 HTR7P34969 479 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 ZNF792Q3KQV3 632 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 ANKS6Q68DC2 871 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 PKN3Q6P5Z2 889 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 HOMEZQ8IX15 550 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 DQX1Q8TE96 717 aaKnown RBP14.83□□□□□ -0.04
HDAC6-220ENST00000477528 MID1IP1Q9NPA3 183 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 NDUFA13Q9P0J0 144 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 IGSF9Q9P2J2 1179 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 CROTQ9UKG9 612 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 CRYL1Q9Y2S2 319 aa14.83□□□□□ -0.04
HDAC6-220ENST00000477528 PRR5-ARHGAP8B1AHC4 643 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 GLUD2P49448 558 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 IRX1P78414 480 aaPredicted RBP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 ARHGAP8P85298 464 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 CTBP1Q13363 440 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 SYTL3Q4VX76 610 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 RIPOR1Q6ZS17 1223 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 GLT6D1Q7Z4J2 308 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 SNX31Q8N9S9 440 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 ACBD6Q9BR61 282 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 SYT17Q9BSW7 474 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 SLC25A23Q9BV35 468 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 CDH19Q9H159 772 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 CAB39LQ9H9S4 337 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 XPR1Q9UBH6 696 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 EIF3LQ9Y262 564 aaKnown RBP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 IGKV6-21A0A0C4DH24 114 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 CACNA2D1P54289 1103 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 NRLP54845 237 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 NFYCQ13952 458 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 ULK2Q8IYT8 1036 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 WDTC1Q8N5D0 677 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 LENG1Q96BZ8 264 aaPredicted RBP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 RBBP8Q99708 897 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 PRDM5Q9NQX1 630 aaPredicted RBP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 KANSL1LA0AUZ9 987 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 A8MUI8 341 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 TRAFD1O14545 582 aaPredicted RBP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 PPEF2O14830 753 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 LRG1P02750 347 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 URODP06132 367 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 CKMP06732 381 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 SOX11P35716 441 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 WNT3AP56704 352 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 WNT7BP56706 349 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 PLOD1Q02809 727 aaPredicted RBP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 LRRC23Q53EV4 343 aaPredicted RBP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 SGO1Q5FBB7 561 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 SLC9A4Q6AI14 798 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 TRMT10BQ6PF06 316 aaKnown RBP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 TNIP2Q8NFZ5 429 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 BRI3BPQ8WY22 251 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 C17orf80Q9BSJ5 609 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 ARHGEF3Q9NR81 526 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 AAASQ9NRG9 546 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms