RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 LRRTM2O43300 516 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 MSI1O43347 362 aaKnown RBP4.93□□□□□ -1.62
USP4-209ENST00000475873 CDC45O75419 566 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 PAK4O96013 591 aaPredicted RBP4.93□□□□□ -1.62
USP4-209ENST00000475873 ASLP04424 464 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 ANXA6P08133 673 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 ITGA3P26006 1051 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 ADRA1BP35368 520 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 CLCN1P35523 988 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 HDAC4P56524 1084 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 RNASE9P60153 205 aaKnown RBP4.93□□□□□ -1.62
USP4-209ENST00000475873 ST8SIA6P61647 398 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 B4GALNT1Q00973 533 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 DPYDQ12882 1025 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 CHAF1BQ13112 559 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 ERV3-1Q14264 604 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 WDR72Q3MJ13 1102 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 TMEM119Q4V9L6 283 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 CRB2Q5IJ48 1285 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 CERCAMQ5T4B2 595 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 ADGRF1Q5T601 910 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 TMEM164Q5U3C3 297 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 PAPD7Q5XG87 772 aaKnown RBP4.93□□□□□ -1.62
USP4-209ENST00000475873 ESRP1Q6NXG1 681 aaKnown RBP4.93□□□□□ -1.62
USP4-209ENST00000475873 TRAPPC11Q7Z392 1133 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 SFR1Q86XK3 245 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 CBWD2Q8IUF1 395 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 NLGN4XQ8N0W4 816 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 NLGN4YQ8NFZ3 816 aaPredicted RBP4.93□□□□□ -1.62
USP4-209ENST00000475873 NDRG1Q92597 394 aaKnown RBP4.93□□□□□ -1.62
USP4-209ENST00000475873 GLMNQ92990 594 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 RTP4Q96DX8 246 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 CCDC74BQ96LY2 380 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 TBATAQ96M53 351 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 SPAG5Q96R06 1193 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 TWNKQ96RR1 684 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 BARD1Q99728 777 aaKnown RBP4.93□□□□□ -1.62
USP4-209ENST00000475873 DDA1Q9BW61 102 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 FGFBP2Q9BYJ0 223 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 SLC29A3Q9BZD2 475 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 ST6GALNAC4Q9H4F1 302 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 PARVGQ9HBI0 331 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 BLOC1S4Q9NUP1 217 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 TMEM9Q9P0T7 183 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 STIM2Q9P246 746 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 SPASTQ9UBP0 616 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 KCNG1Q9UIX4 513 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 APPL1Q9UKG1 709 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 CROTQ9UKG9 612 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 ODF2LQ9ULJ1 636 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 PCDHA5Q9Y5H7 936 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 MXRA5Q9NR99 2828 aa4.93□□□□□ -1.62
USP4-209ENST00000475873 FER1L5A0AVI2 2057 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 ZSCAN5CA6NGD5 496 aaPredicted RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 E2F3O00716 465 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 HGSO14964 777 aaPredicted RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 DLGAP3O95886 979 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 SRPRAP08240 638 aaKnown RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 FAM163BP0C2L3 166 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 CD1EP15812 388 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 XBP1P17861 261 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 ADORA2BP29275 332 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 CSF2RBP32927 897 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 STAT5AP42229 794 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 RABIFP47224 123 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 TOB1P50616 345 aaPredicted RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 CASP5P51878 434 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 PGDP52209 483 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 MYL6P60660 151 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 ECT2LQ008S8 904 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 GUCY1B3Q02153 619 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 LTBQ06643 244 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 ABHD18Q0P651 414 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 SEMA5AQ13591 1074 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 ZRSR1Q15695 479 aaKnown RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 TTC38Q5R3I4 469 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 MPP7Q5T2T1 576 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 KRT79Q5XKE5 535 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 CEP135Q66GS9 1140 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 NEK5Q6P3R8 708 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 SCARA5Q6ZMJ2 495 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 Q6ZVU0 165 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 Q71RC1 249 aaPredicted RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 RUFY3Q7L099 469 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 ZNF720Q7Z2F6 126 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 GPBP1Q86WP2 473 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 SKAP1Q86WV1 359 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 DCP2Q8IU60 420 aaKnown RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 APLFQ8IW19 511 aaPredicted RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 MFN1Q8IWA4 741 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 CCDC117Q8IWD4 279 aaPredicted RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 CISD2Q8N5K1 135 aaKnown RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 ITLN2Q8WWU7 325 aaPredicted RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 ZNF516Q92618 1163 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 INPP5DQ92835 1189 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 PLD4Q96BZ4 506 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 ANKRD36BP1Q96IX9 119 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 CTRCQ99895 268 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 SMR3AQ99954 134 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 SLC17A9Q9BYT1 436 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms