RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	CLCN1	P35523	988 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	ACTN2	P35609	894 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	SKOR1	P84550	965 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	E2F1	Q01094	437 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	SLC6A3	Q01959	620 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	CCDC173	Q0VFZ6	552 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	NME3	Q13232	169 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	MTA1	Q13330	715 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	FZD2	Q14332	565 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	TPRG1L	Q5T0D9	272 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	SMYD5	Q6GMV2	418 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	TRNP1	Q6NT89	227 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	C22orf39	Q6P5X5	142 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	KDM7A	Q6ZMT4	941 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	GPR155	Q7Z3F1	870 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	DCAF4L2	Q8NA75	395 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	IFT43	Q96FT9	208 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	APOLD1	Q96LR9	279 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	NLGN3	Q9NZ94	848 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	KLF15	Q9UIH9	416 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	DOCK4	Q8N1I0	1966 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	TDRD6	O60522	2096 aa	Known RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	POM121B	A6NF01	834 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815		K7ESM1	405 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815		M0QYT0	321 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	BIN1	O00499	593 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	KPNA3	O00505	521 aa	Predicted RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	SCAMP1	O15126	338 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	FFAR2	O15552	330 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	SPINT1	O43278	529 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	LEFTY1	O75610	366 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	MPO	P05164	745 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	RHOC	P08134	193 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	PNMA6A	P0CW24	399 aa	Predicted RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	PON1	P27169	355 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	CDH5	P33151	784 aa	Predicted RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	CLCN6	P51797	869 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	ARHGAP44	Q17R89	818 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	BRMS1L	Q5PSV4	323 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	IGF2-AS	Q6U949	168 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	LINGO4	Q6UY18	593 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	KYAT3	Q6YP21	454 aa	Known RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	DPY19L3	Q6ZPD9	716 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	ERN2	Q76MJ5	926 aa	Known RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	TMC6	Q7Z403	805 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	SETD3	Q86TU7	594 aa	Predicted RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	ATP11C	Q8NB49	1132 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	SNRNP27	Q8WVK2	155 aa	Known RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	PRR11	Q96HE9	360 aa	Predicted RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	ZNF578	Q96N58	590 aa	Predicted RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	PPP1R9B	Q96SB3	815 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	KLF6	Q99612	283 aa	Predicted RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	C2orf49	Q9BVC5	232 aa	Predicted RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	TKTL2	Q9H0I9	626 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	MUC3B	Q9H195	1237 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	TNKS2	Q9H2K2	1166 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	HOOK1	Q9UJC3	728 aa	Known RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	PNMA8B	Q9ULN7	279 aa	Predicted RBP	11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	CHD5	Q8TDI0	1954 aa		11.41	□□□□□ -0.58
PTPN7-204	ENST00000462815	UBR5	O95071	2799 aa	Predicted RBP	11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	GTPBP10	A4D1E9	387 aa	Known RBP	11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	CASC3	O15234	703 aa	Known RBP	11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	BNIP3L	O60238	219 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	NEBL	O76041	1014 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	CSF2	P04141	144 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	PRNP	P04156	253 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	ZNF18	P17022	549 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	AKT2	P31751	481 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	GABRB2	P47870	512 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	CXADR	P78310	365 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	KRT83	P78385	493 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	ARF5	P84085	180 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	DAB2	P98082	770 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	ZNF542P	Q5EBM4	170 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	ARSI	Q5FYB1	569 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	OR6B2	Q6IFH4	312 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815		Q6ZSR6	202 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	SLC47A2	Q86VL8	602 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	ZNF248	Q8NDW4	579 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	ZNF548	Q8NEK5	533 aa	Predicted RBP	11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	OR7D4	Q8NG98	312 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	RNF34	Q969K3	372 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	FAM81B	Q96LP2	452 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	C1orf74	Q96LT6	269 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	TBCB	Q99426	244 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	CALN1	Q9BXU9	219 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	SEMA4C	Q9C0C4	833 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	SIK2	Q9H0K1	926 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	PLCB1	Q9NQ66	1216 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	MPP6	Q9NZW5	540 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	IL36A	Q9UHA7	158 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	NEU3	Q9UQ49	428 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	FADS3	Q9Y5Q0	445 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	ACTL7A	Q9Y615	435 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	HS3ST3A1	Q9Y663	406 aa		11.4	□□□□□ -0.58
PTPN7-204	ENST00000462815	SPTY2D1-AS1	A0A0U1RR47	76 aa		11.39	□□□□□ -0.59
PTPN7-204	ENST00000462815	PMS2P1	A4D2B8	440 aa		11.39	□□□□□ -0.59
PTPN7-204	ENST00000462815	GOLGA6L4	A6NEF3	574 aa		11.39	□□□□□ -0.59
PTPN7-204	ENST00000462815		A6NNZ2	444 aa		11.39	□□□□□ -0.59
PTPN7-204	ENST00000462815	ERVH48-1	M5A8F1	160 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms