RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 ZSCAN30Q86W11 494 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 PCDH20Q8N6Y1 951 aaKnown RBP15.72■□□□□ 0.11
SKA3-204ENST00000462482 OR7D4Q8NG98 312 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 OR4C6Q8NH72 309 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 RFFLQ8WZ73 363 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 NT5C3BQ969T7 300 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 IFT43Q96FT9 208 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 UBL7Q96S82 380 aaPredicted RBP15.72■□□□□ 0.11
SKA3-204ENST00000462482 HAPLN3Q96S86 360 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 HEPHQ9BQS7 1158 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 CEP44Q9C0F1 390 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 FZD3Q9NPG1 666 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 IPO11Q9UI26 975 aaKnown RBP15.72■□□□□ 0.11
SKA3-204ENST00000462482 AJAP1Q9UKB5 411 aaPredicted RBP15.72■□□□□ 0.11
SKA3-204ENST00000462482 SNX10Q9Y5X0 201 aa15.72■□□□□ 0.11
SKA3-204ENST00000462482 DMXL2Q8TDJ6 3036 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 IGLV3-10A0A075B6K4 115 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 TRIM38O00635 465 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 SMAD6O43541 496 aaKnown RBP15.71■□□□□ 0.11
SKA3-204ENST00000462482 LEFTY1O75610 366 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 MT-CO3P00414 261 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 TFE3P19532 575 aaPredicted RBP15.71■□□□□ 0.11
SKA3-204ENST00000462482 EIF2S3P41091 472 aaKnown RBP15.71■□□□□ 0.11
SKA3-204ENST00000462482 GEMIN4P57678 1058 aaKnown RBP15.71■□□□□ 0.11
SKA3-204ENST00000462482 HNRNPKP61978 463 aaKnown RBP eCLIP15.71■□□□□ 0.11
SKA3-204ENST00000462482 RPS21P63220 83 aaKnown RBP15.71■□□□□ 0.11
SKA3-204ENST00000462482 SGCGQ13326 291 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 MAPK8IP2Q13387 824 aaPredicted RBP15.71■□□□□ 0.11
SKA3-204ENST00000462482 KIAA1161Q6NSJ0 714 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 DPY19L3Q6ZPD9 716 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 TMC6Q7Z403 805 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 PTAR1Q7Z6K3 402 aaPredicted RBP15.71■□□□□ 0.11
SKA3-204ENST00000462482 XYLT1Q86Y38 959 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 ZNF683Q8IZ20 524 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 SLC25A45Q8N413 288 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 CHST14Q8NCH0 376 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 OR13H1Q8NG92 308 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 FGF11Q92914 225 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 DUSP23Q9BVJ7 150 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 ABCG4Q9H172 646 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 DNAJC28Q9NX36 388 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 HS3ST3A1Q9Y663 406 aa15.71■□□□□ 0.11
SKA3-204ENST00000462482 H3BM21 787 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 NEMP1O14524 444 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 PIAS2O75928 621 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 ITGB7P26010 798 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 ERCC5P28715 1186 aaPredicted RBP15.7■□□□□ 0.1
SKA3-204ENST00000462482 SERPINH1P50454 418 aaKnown RBP15.7■□□□□ 0.1
SKA3-204ENST00000462482 INSM1Q01101 510 aaPredicted RBP15.7■□□□□ 0.1
SKA3-204ENST00000462482 GNA12Q03113 381 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 CARD16Q5EG05 197 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 KLHDC7AQ5VTJ3 777 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 KDM7AQ6ZMT4 941 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 Q6ZSR6 202 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 FAM131BQ86XD5 332 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 DRC7Q8IY82 874 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 RYBPQ8N488 228 aaPredicted RBP15.7■□□□□ 0.1
SKA3-204ENST00000462482 DCBLD1Q8N8Z6 715 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 SLC17A9Q9BYT1 436 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 USP29Q9HBJ7 922 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 ANLNQ9NQW6 1124 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 NLGN3Q9NZ94 848 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 HPCAL4Q9UM19 191 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 FHOD1Q9Y613 1164 aa15.7■□□□□ 0.1
SKA3-204ENST00000462482 COL5A1P20908 1838 aaPredicted RBP15.7■□□□□ 0.1
SKA3-204ENST00000462482 KNL1Q8NG31 2342 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 FPGTO14772 594 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 TPM2P07951 284 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 ADRB3P13945 408 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 L1CAMP32004 1257 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 FLT3P36888 993 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 CCNHP51946 323 aaPredicted RBP15.69■□□□□ 0.1
SKA3-204ENST00000462482 CLDN2P57739 230 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 POLD3Q15054 466 aaPredicted RBP15.69■□□□□ 0.1
SKA3-204ENST00000462482 HSP90AA4PQ58FG1 418 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 NAA35Q5VZE5 725 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 SEL1L3Q68CR1 1132 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 RWDD4Q6NW29 188 aaKnown RBP15.69■□□□□ 0.1
SKA3-204ENST00000462482 ABI3BPQ7Z7G0 1075 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 ZNF677Q86XU0 584 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 SNIP1Q8TAD8 396 aaKnown RBP15.69■□□□□ 0.1
SKA3-204ENST00000462482 CPA5Q8WXQ8 436 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 CFAP57Q96MR6 1250 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 DEPDC7Q96QD5 511 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 STK33Q9BYT3 514 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 RETREG1Q9H6L5 497 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 ZDHHC6Q9H6R6 413 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 TMPRSS4Q9NRS4 437 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 UCKL1Q9NWZ5 548 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 NCKIPSDQ9NZQ3 722 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 PPARGC1AQ9UBK2 798 aaKnown RBP15.69■□□□□ 0.1
SKA3-204ENST00000462482 APC2O95996 2303 aa15.69■□□□□ 0.1
SKA3-204ENST00000462482 CABIN1Q9Y6J0 2220 aa15.68■□□□□ 0.1
SKA3-204ENST00000462482 FREM2Q5SZK8 3169 aa15.68■□□□□ 0.1
SKA3-204ENST00000462482 FAM170AA1A519 330 aa15.68■□□□□ 0.1
SKA3-204ENST00000462482 I6L893 689 aaPredicted RBP15.68■□□□□ 0.1
SKA3-204ENST00000462482 TLX3O43711 291 aaPredicted RBP15.68■□□□□ 0.1
SKA3-204ENST00000462482 AP1G1O43747 822 aa15.68■□□□□ 0.1
SKA3-204ENST00000462482 BRINP1O60477 761 aa15.68■□□□□ 0.1
SKA3-204ENST00000462482 CKMT1AP12532 417 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms