RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PDK2Q15119 407 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 PPM1JQ5JR12 505 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 EFHC2Q5JST6 749 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 MEI1Q5TIA1 1274 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 FAM72AQ5TYM5 149 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 FAM72DQ6L9T8 149 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 KIAA1211LQ6NV74 962 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 SCYL2Q6P3W7 929 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 CHST9Q7L1S5 443 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 SYT13Q7L8C5 426 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 KIAA0907Q7Z7F0 614 aaPredicted RBP9.44□□□□□ -0.9
VPS53-203ENST00000401468 C14orf80Q86SX3 495 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 NLRP14Q86W24 1093 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 FAM72BQ86X60 149 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 PYROXD2Q8N2H3 581 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 SORCS1Q8WY21 1168 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 ALG3Q92685 438 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 RNF34Q969K3 372 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 IGSF8Q969P0 613 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 LMLNQ96KR4 655 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 ZNF670Q9BS34 389 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 SLC2A11Q9BYW1 496 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 MAGEB5Q9BZ81 275 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 DDX56Q9NY93 547 aaKnown RBP9.44□□□□□ -0.9
VPS53-203ENST00000401468 PCSK1NQ9UHG2 260 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 MBD1Q9UIS9 605 aaPredicted RBP9.44□□□□□ -0.9
VPS53-203ENST00000401468 CLEC4EQ9ULY5 219 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 MMP17Q9ULZ9 603 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 MYLKQ15746 1914 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 A0A0A0MRY4 1105 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 GOLGA6L7A0A1B0GV03 622 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 A0A1B0GVM2 712 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 TCAF2A6NFQ2 919 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 PRRT4C9JH25 899 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 F5H5T6 163 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 GIPC1O14908 333 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 FGF10O15520 208 aaPredicted RBP9.43□□□□□ -0.9
VPS53-203ENST00000401468 SPOPO43791 374 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 TSPAN3O60637 253 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 EPN2O95208 641 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 MOCS2O96007 188 aaPredicted RBP9.43□□□□□ -0.9
VPS53-203ENST00000401468 PTPN7P35236 360 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 PTGER3P43115 390 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 KIR2DL1P43626 348 aaPredicted RBP9.43□□□□□ -0.9
VPS53-203ENST00000401468 MARCKSL1P49006 195 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 IRAK1P51617 712 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 RAB15P59190 212 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 DPYSL3Q14195 570 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 CRY1Q16526 586 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 CSRP2Q16527 193 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 ATP13A4Q4VNC1 1196 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 MPPE1Q53F39 396 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 RAP1GAP2Q684P5 730 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 RFWD3Q6PCD5 774 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 PEX26Q7Z412 305 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 CHSY1Q86X52 802 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS53-203ENST00000401468 ZNF513Q8N8E2 541 aaPredicted RBP9.43□□□□□ -0.9
VPS53-203ENST00000401468 C12orf50Q8NA57 414 aaPredicted RBP9.43□□□□□ -0.9
VPS53-203ENST00000401468 HJURPQ8NCD3 748 aaPredicted RBP9.43□□□□□ -0.9
VPS53-203ENST00000401468 OR2I1PQ8NGU4 316 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 EXD1Q8NHP7 514 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 PIGKQ92643 395 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 KRT35Q92764 455 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 ACDQ96AP0 544 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 ALS2CR12Q96Q35 445 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 TLR10Q9BXR5 811 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 ZWILCHQ9H900 591 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 PRDM16Q9HAZ2 1276 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 PCDH18Q9HCL0 1135 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS53-203ENST00000401468 TMEM248Q9NWD8 314 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 TRMT1Q9NXH9 659 aaKnown RBP9.43□□□□□ -0.9
VPS53-203ENST00000401468 CACNA2D2Q9NY47 1150 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 CWC15Q9P013 229 aaKnown RBP9.43□□□□□ -0.9
VPS53-203ENST00000401468 AMFRQ9UKV5 643 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 EFR3BQ9Y2G0 817 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 TBC1D30Q9Y2I9 924 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 SLC27A6Q9Y2P4 619 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 JRKLQ9Y4A0 524 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 HYOU1Q9Y4L1 999 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 PLXNB3Q9ULL4 1909 aa9.43□□□□□ -0.9
VPS53-203ENST00000401468 CXorf51AA0A1B0GTR3 108 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 TMEM110-MUSTN1A8MSY1 372 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 FANCGO15287 622 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 ZZEF1O43149 2961 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 SPINT1O43278 529 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 CLDN11O75508 207 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 CISD3P0C7P0 127 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 RHOQP17081 205 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 KDELR1P24390 212 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 CDKN2BP42772 138 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 CDH4P55283 916 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 RPS24P62847 133 aaKnown RBP9.42□□□□□ -0.9
VPS53-203ENST00000401468 GAD2Q05329 585 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 PPP2R5EQ16537 467 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 SMTNL2Q2TAL5 461 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 UAP1L1Q3KQV9 507 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 FBXO43Q4G163 708 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 ALFQ53S48 1182 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms