RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SMC6Q96SB8 1091 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 CYP2S1Q96SQ9 504 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 TASP1Q9H6P5 420 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 ACSS3Q9H6R3 686 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 BFARQ9NZS9 450 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 ZC3H7BQ9UGR2 993 aaKnown RBP18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 CHMP2BQ9UQN3 213 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 USP15Q9Y4E8 981 aaPredicted RBP18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 CAPN7Q9Y6W3 813 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 NYNRINQ9P2P1 1898 aaKnown RBP18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 CACNG3O60359 315 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 EPCAMP16422 314 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 GCAP28676 217 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 TNK2Q07912 1038 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 CAMK1Q14012 370 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 RFTN1Q14699 578 aaPredicted RBP18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 FASTKD3Q14CZ7 662 aaKnown RBP18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 MSS51Q4VC12 460 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 GPR158Q5T848 1215 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 Q6ZNB5 142 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 ARHGAP36Q6ZRI8 547 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 FAM217AQ8IXS0 508 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 CFAP52Q8N1V2 620 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 CPXM2Q8N436 756 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 USP33Q8TEY7 942 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 PABPC5Q96DU9 382 aaKnown RBP18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 CYTH2Q99418 400 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 CDCA3Q99618 268 aaPredicted RBP18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 EBNA1BP2Q99848 306 aaKnown RBP18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 PRKD2Q9BZL6 878 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 TRABDQ9H4I3 376 aa18.52■□□□□ 0.55
CCDC88C-203ENST00000389856 MYO18AQ92614 2054 aaKnown RBP18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 TCP11X1B4DZS4 312 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 TRDMT1O14717 391 aaKnown RBP18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 PRAMEF11O60813 436 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 RHOP08100 348 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 CD68P34810 354 aaPredicted RBP18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 SPARCL1Q14515 664 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 HP1BP3Q5SSJ5 553 aaPredicted RBP18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 SYCP2LQ5T4T6 812 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 ARMC3Q5W041 872 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 PPP2R2DQ66LE6 453 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 IL31Q6EBC2 164 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 FAM109BQ6ICB4 259 aaPredicted RBP18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 CIR1Q86X95 450 aaPredicted RBP18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 KLHDC8BQ8IXV7 354 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 ANKRD42Q8N9B4 389 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 TMA16Q96EY4 203 aaKnown RBP18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 STAMBPL1Q96FJ0 436 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 SLC22A12Q96S37 553 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 ELAC2Q9BQ52 826 aaKnown RBP18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 DHRS4Q9BTZ2 278 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 TLE6Q9H808 572 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 VPS45Q9NRW7 570 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 CFAP97Q9P2B7 532 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 TBK1Q9UHD2 729 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 TBC1D30Q9Y2I9 924 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 YBX2Q9Y2T7 364 aaKnown RBP18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 TTLL3Q9Y4R7 772 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 MAD1L1Q9Y6D9 718 aa18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 HELZP42694 1942 aaKnown RBP18.51■□□□□ 0.55
CCDC88C-203ENST00000389856 E2F8A0AVK6 867 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 MAGEB16A2A368 324 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 DNAJC8O75937 253 aaPredicted RBP18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 ARHGEF15O94989 841 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 CYBBP04839 570 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 NPY2RP49146 381 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 RPS24P62847 133 aaKnown RBP18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 MPP3Q13368 585 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 ZNF235Q14590 738 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 MPPE1Q53F39 396 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 MPP7Q5T2T1 576 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 ADGRD1Q6QNK2 874 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 TEX26Q8N6G2 289 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 DNAAF3Q8N9W5 541 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 SHKBP1Q8TBC3 707 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 ZSCAN18Q8TBC5 510 aaPredicted RBP18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 DENND1AQ8TEH3 1009 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 PRICKLE1Q96MT3 831 aaPredicted RBP18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 SLC25A51Q9H1U9 297 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 SLC28A3Q9HAS3 691 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 PIDD1Q9HB75 910 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 DZANK1Q9NVP4 752 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 RABGEF1Q9UJ41 708 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 IKBKGQ9Y6K9 419 aa18.5■□□□□ 0.55
CCDC88C-203ENST00000389856 H0Y626 953 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 RFPL2O75678 378 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 ZWINTO95229 277 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 KRT15P19012 456 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 GBP2P32456 591 aaPredicted RBP18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 GPX6P59796 221 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 CDH17Q12864 832 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 MPP2Q14168 576 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 LBRQ14739 615 aaKnown RBP18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 KCTD11Q693B1 232 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 CASC4Q6P4E1 433 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 ZNF534Q76KX8 674 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 CMTM8Q8IZV2 173 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 CNTD1Q8N815 330 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 ZNF557Q8N988 423 aaPredicted RBP18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms