RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 SCAMP5Q8TAC9 235 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 PYDC1Q8WXC3 89 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 PPP2R3CQ969Q6 453 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 TLCD1Q96CP7 247 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 CDK5RAP1Q96SZ6 601 aaKnown RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 SAR1AQ9NR31 198 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 IRS2Q9Y4H2 1338 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 CCL22O00626 93 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 MGEA5O60502 916 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 LGR5O75473 907 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 FGFR1P11362 822 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 ZNF284Q2VY69 593 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 ATP6AP1LQ52LC2 224 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 RIPOR1Q6ZS17 1223 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 SLC24A5Q71RS6 500 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 ITIH5Q86UX2 942 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 OR6K2Q8NGY2 324 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 SLC25A13Q9UJS0 675 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 DNMT3LQ9UJW3 386 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 ZSCAN9O15535 394 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 HALP42357 657 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 BCL2L1Q07817 233 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 AASDHQ4L235 1098 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 RNF43Q68DV7 783 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 TAGAPQ8N103 731 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 ZNF567Q8N184 647 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 DDX1Q92499 740 aaKnown RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 EMID1Q96A84 441 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 UROC1Q96N76 676 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 RHOBTB2Q9BYZ6 727 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 SDCBP2Q9H190 292 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 YY1AP1Q9H869 796 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 GMIPQ9P107 970 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 TCRBV7S3A2A0A539 114 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 ARHGAP10A1A4S6 786 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 BCLAF3A2AJT9 711 aaKnown RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 EDIL3O43854 480 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 METTL18O95568 372 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 ACADSP16219 412 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 TSHRP16473 764 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 GRIA1P42261 906 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 CTU1Q7Z7A3 348 aaKnown RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 TAC4Q86UU9 113 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 FNDC5Q8NAU1 212 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 SLC35B2Q8TB61 432 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 ZSCAN18Q8TBC5 510 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 PNPOQ9NVS9 261 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 ZMYM5Q9UJ78 669 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 EIF3LQ9Y262 564 aaKnown RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 TAF1P21675 1872 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 CKBP12277 381 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 ZNF7P17097 686 aaPredicted RBP13.36□□□□□ -0.27
NPHP4-203ENST00000378169 GAD2Q05329 585 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 NAB1Q13506 487 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 PTPRNQ16849 979 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 SPDYE7PQ495Y7 208 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 TIGD5Q53EQ6 642 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 ZNF618Q5T7W0 954 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 ARMC12Q5T9G4 340 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 FITM2Q8N6M3 262 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 MAF1Q9H063 256 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 ELOVL6Q9H5J4 265 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 PRDM16Q9HAZ2 1276 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 GLOD4Q9HC38 313 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 CATSPERZQ9NTU4 200 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 MOXD2PA6NHM9 499 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 SHOX2O60902 331 aaPredicted RBP13.36□□□□□ -0.27
NPHP4-203ENST00000378169 ZNF23P17027 643 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 IFNA8P32881 189 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 PBX3P40426 434 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 DAOAP59103 153 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 PRKCZQ05513 592 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 INTS6LQ5JSJ4 861 aaKnown RBP13.36□□□□□ -0.27
NPHP4-203ENST00000378169 SCIMPQ6UWF3 145 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 ANKS3Q6ZW76 656 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 LDB1Q86U70 411 aaPredicted RBP13.36□□□□□ -0.27
NPHP4-203ENST00000378169 STK32AQ8WU08 396 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 OSBPL7Q9BZF2 842 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 hCG_2014768A0A024R1R8 64 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 HSPA1AP0DMV8 641 aaKnown RBP13.36□□□□□ -0.27
NPHP4-203ENST00000378169 HSPA1BP0DMV9 641 aaKnown RBP13.36□□□□□ -0.27
NPHP4-203ENST00000378169 SLC2A4P14672 509 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 PSMA4P25789 261 aaKnown RBP13.36□□□□□ -0.27
NPHP4-203ENST00000378169 POM121L1PQ3SYA9 428 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 CACHD1Q5VU97 1274 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 OLFML2BQ68BL8 750 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 ECHDC2Q86YB7 292 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 SLC44A2Q8IWA5 706 aaPredicted RBP13.36□□□□□ -0.27
NPHP4-203ENST00000378169 CMASQ8NFW8 434 aaPredicted RBP13.36□□□□□ -0.27
NPHP4-203ENST00000378169 FTHL17Q9BXU8 183 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 GPR88Q9GZN0 384 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 PCDHB9Q9Y5E1 797 aa13.36□□□□□ -0.27
NPHP4-203ENST00000378169 KPNA3O00505 521 aaPredicted RBP13.35□□□□□ -0.27
NPHP4-203ENST00000378169 MRASO14807 208 aa13.35□□□□□ -0.27
NPHP4-203ENST00000378169 SYNCRIPO60506 623 aaKnown RBP13.35□□□□□ -0.27
NPHP4-203ENST00000378169 CCNG1P51959 295 aa13.35□□□□□ -0.27
NPHP4-203ENST00000378169 CRHR2Q13324 411 aa13.35□□□□□ -0.27
NPHP4-203ENST00000378169 RFWD3Q6PCD5 774 aa13.35□□□□□ -0.27
NPHP4-203ENST00000378169 PTGR2Q8N8N7 351 aaPredicted RBP13.35□□□□□ -0.27
NPHP4-203ENST00000378169 INPP5DQ92835 1189 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms