RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SUSD6Q92537 303 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 XAGE2Q96GT9 111 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 THOC3Q96J01 351 aaKnown RBP4.7□□□□□ -1.66
SCN1A-202ENST00000375405 LMAN2LQ9H0V9 348 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 EPB41L1Q9H4G0 881 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 OSBPL3Q9H4L5 887 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 PTGFRNQ9P2B2 879 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 PCDHGA1Q9Y5H4 931 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 HFM1A2PYH4 1435 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 NCOA1Q15788 1441 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ARGFXA6NJG6 315 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 H0Y858 1186 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 NARSO43776 548 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CYP2C9P11712 490 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 DCKP27707 260 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CRABP2P29373 138 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 FMO4P31512 558 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 IL18R1Q13478 541 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SCARB2Q14108 478 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PTPRNQ16849 979 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SMTNL2Q2TAL5 461 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 UBE2NLQ5JXB2 153 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 FBXO31Q5XUX0 539 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ARMC8Q8IUR7 673 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF567Q8N184 647 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SDR42E1Q8WUS8 393 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SLC7A6OSQ96CW6 309 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 DCBLD2Q96PD2 775 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PARD6BQ9BYG5 372 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PDE7BQ9NP56 450 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 BRD7Q9NPI1 651 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 IP6K2Q9UHH9 426 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PCDHB10Q9UN67 800 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 NOS1P29475 1434 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 TP73O15350 636 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 LDHAP00338 332 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 LINGO3P0C6S8 592 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 TGFB3P10600 412 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GNA15P30679 374 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GPR15P49685 360 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 AP2S1P53680 142 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ITGA1P56199 1179 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 RNF4P78317 190 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 EMC2Q15006 297 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 TEAD4Q15561 434 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 DCAF6Q58WW2 860 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CBWD3Q5JTY5 395 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GLRA4Q5JXX5 417 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CBWD5Q5RIA9 395 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 MLIPQ5VWP3 458 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CIAPIN1Q6FI81 312 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 MIB1Q86YT6 1006 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PSTKQ8IV42 348 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 LAS2Q8IYD9 372 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 MLKLQ8NB16 471 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 OR4C6Q8NH72 309 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 NDNFQ8TB73 568 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 TRPM4Q8TD43 1214 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 UPF1Q92900 1129 aaKnown RBP eCLIP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 TMEM159Q96B96 161 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SIRPGQ9P1W8 387 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF180Q9UJW8 692 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SLC16A3O15427 465 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 NPHS1O60500 1241 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CYP2E1P05181 493 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PGAM1P18669 254 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PLCG1P19174 1290 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 RPS3P23396 243 aaKnown RBP eCLIP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 RRM1P23921 792 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 MYL9P24844 172 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 MGAT1P26572 445 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 EIF2B2P49770 351 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 SEPHS1P49903 392 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PSMD7P51665 324 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PRKG2Q13237 762 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 BMPR2Q13873 1038 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 R3HDM1Q15032 1099 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 OASLQ15646 514 aaKnown RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 AMZ1Q400G9 498 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 PLA2G4FQ68DD2 849 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 NCEH1Q6PIU2 408 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF433Q8N7K0 673 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CHST13Q8NET6 341 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 OR5T2Q8NGG2 359 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 OR8K1Q8NGG5 319 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 LINGO1Q96FE5 620 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 MAP3K14Q99558 947 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 CHP1Q99653 195 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ABCB6Q9NP58 842 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 XPNPEP3Q9NQH7 507 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 DNAJC28Q9NX36 388 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 KCNN3Q9UGI6 736 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 NAALADL1Q9UQQ1 740 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GSTK1Q9Y2Q3 226 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 IGF1RP08069 1367 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ANKDD1BA6NHY2 528 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 GRAP2O75791 330 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 HMGCRP04035 888 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ALPPL2P10696 532 aa4.69□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF37AP17032 561 aaPredicted RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms