RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 GPR27Q9NS67 375 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 DDIT4Q9NX09 232 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.18□□□□□ -0.14
VPS29-201ENST00000360579 TBC1D30Q9Y2I9 924 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 ENTPD2Q9Y5L3 495 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 SPTY2D1-AS1A0A0U1RR47 76 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 CPED1A4D0V7 1026 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 EME2A4GXA9 379 aaPredicted RBP14.17□□□□□ -0.14
VPS29-201ENST00000360579 CDRT15L2A8MXV6 281 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 E5RJQ4 531 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 TPP1O14773 563 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 NEBLO76041 1014 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 ZNF202O95125 648 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 GLI1P08151 1106 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 SRCP12931 536 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 RECQLP46063 649 aaPredicted RBP14.17□□□□□ -0.14
VPS29-201ENST00000360579 RABIFP47224 123 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 RPIAP49247 311 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 CDH4P55283 916 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 RPS21P63220 83 aaKnown RBP14.17□□□□□ -0.14
VPS29-201ENST00000360579 CENPCQ03188 943 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 PKP1Q13835 747 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 CDKN3Q16667 212 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 TMEM259Q4ZIN3 620 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 ZNF542PQ5EBM4 170 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 ZNF658Q5TYW1 1059 aaPredicted RBP14.17□□□□□ -0.14
VPS29-201ENST00000360579 ANKRD40Q6AI12 368 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 RRAGAQ7L523 313 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 EFL1Q7Z2Z2 1120 aaKnown RBP14.17□□□□□ -0.14
VPS29-201ENST00000360579 CLEC14AQ86T13 490 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 HSCBQ8IWL3 235 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 KAT5Q92993 513 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 ARRDC3Q96B67 414 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 IL12RB2Q99665 862 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 IPO11Q9UI26 975 aaKnown RBP14.17□□□□□ -0.14
VPS29-201ENST00000360579 VANGL2Q9ULK5 521 aa14.17□□□□□ -0.14
VPS29-201ENST00000360579 ZFR2Q9UPR6 939 aaKnown RBP14.17□□□□□ -0.14
VPS29-201ENST00000360579 SYNJ2BP-COX16A0A087WUM0 186 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 PYCARD-AS1I3L0S3 204 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 AQP9O43315 295 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 CALCAP01258 141 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 ITGA2BP08514 1039 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 NEK3P51956 506 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 FZD2Q14332 565 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 NR0B2Q15466 257 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 ARL13BQ3SXY8 428 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 SEL1L3Q68CR1 1132 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 OR6B2Q6IFH4 312 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 DENND1BQ6P3S1 775 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 GUSBP11Q6P575 273 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 OR52K2Q8NGK3 314 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 BTN2A2Q8WVV5 523 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 NAT6Q93015 286 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 PRR11Q96HE9 360 aaPredicted RBP14.16□□□□□ -0.14
VPS29-201ENST00000360579 FEM1CQ96JP0 617 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 BMFQ96LC9 184 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 CEP63Q96MT8 703 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 GSDMAQ96QA5 445 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 CCNL2Q96S94 520 aaPredicted RBP14.16□□□□□ -0.14
VPS29-201ENST00000360579 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.16□□□□□ -0.14
VPS29-201ENST00000360579 SLC17A9Q9BYT1 436 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 SCAND2PQ9GZW5 306 aaPredicted RBP14.16□□□□□ -0.14
VPS29-201ENST00000360579 ASNSD1Q9NWL6 643 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 COX16Q9P0S2 106 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 IL36AQ9UHA7 158 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 CNTN6Q9UQ52 1028 aa14.16□□□□□ -0.14
VPS29-201ENST00000360579 CCDC187A0A096LP49 1063 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 A0A1W2PNU3 283 aaPredicted RBP14.15□□□□□ -0.14
VPS29-201ENST00000360579 HSF2BPO75031 334 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 TNFSF15O95150 251 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 MT-CO1P00395 513 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 RHOCP08134 193 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 KRT5P13647 590 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 PITX1P78337 314 aaPredicted RBP14.15□□□□□ -0.14
VPS29-201ENST00000360579 CLN3Q13286 438 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 ZSCAN23Q3MJ62 389 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 C5orf22Q49AR2 442 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 CCDC40Q4G0X9 1142 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 EFHC1Q5JVL4 640 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 FOXR1Q6PIV2 292 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 DEFB106AQ8N104 65 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 LMO3Q8TAP4 145 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 SLC2A13Q96QE2 648 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 IL17BQ9UHF5 180 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 VPS51Q9UID3 782 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 ATXN7L1Q9ULK2 861 aaPredicted RBP14.15□□□□□ -0.14
VPS29-201ENST00000360579 HS3ST4Q9Y661 456 aa14.15□□□□□ -0.14
VPS29-201ENST00000360579 BOD1L1Q8NFC6 3051 aa14.14□□□□□ -0.15
VPS29-201ENST00000360579 UBR5O95071 2799 aaPredicted RBP14.14□□□□□ -0.15
VPS29-201ENST00000360579 POM121BA6NF01 834 aa14.14□□□□□ -0.15
VPS29-201ENST00000360579 FPGTO14772 594 aa14.14□□□□□ -0.15
VPS29-201ENST00000360579 AP1G1O43747 822 aa14.14□□□□□ -0.15
VPS29-201ENST00000360579 LETM1O95202 739 aaPredicted RBP14.14□□□□□ -0.15
VPS29-201ENST00000360579 SMC2O95347 1197 aa14.14□□□□□ -0.15
VPS29-201ENST00000360579 PAK4O96013 591 aaPredicted RBP14.14□□□□□ -0.15
VPS29-201ENST00000360579 ADRB3P13945 408 aa14.14□□□□□ -0.15
VPS29-201ENST00000360579 JUNDP17535 347 aa14.14□□□□□ -0.15
VPS29-201ENST00000360579 PMS1P54277 932 aaKnown RBP14.14□□□□□ -0.15
VPS29-201ENST00000360579 NFATC3Q12968 1075 aa14.14□□□□□ -0.15
VPS29-201ENST00000360579 SGCGQ13326 291 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms