RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PANX3Q96QZ0 392 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 HAPLN3Q96S86 360 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 UPF3AQ9H1J1 476 aaKnown RBP18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 RBM22Q9NW64 420 aaKnown RBP eCLIP18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 PCDHB12Q9Y5F1 795 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 E9PBE3 544 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 SEPT4O43236 478 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 KLHL41O60662 606 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 ZMPSTE24O75844 475 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 CHRNGP07510 517 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 CPOXP36551 454 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 ABL2P42684 1182 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 TBCCQ15814 346 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 PCSK7Q16549 785 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 DDR2Q16832 855 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 MUM1Q2TAK8 710 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 ANO4Q32M45 955 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 SLC9B1Q4ZJI4 515 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 NOMO2Q5JPE7 1267 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 CFAP157Q5JU67 520 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 ARTNQ5T4W7 220 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 DENND5AQ6IQ26 1287 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 PKN3Q6P5Z2 889 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 PHTF2Q8N3S3 785 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 GPR152Q8TDT2 470 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 KCTD4Q8WVF5 259 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 SCYL1Q96KG9 808 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 SUSD3Q96L08 255 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 GATA5Q9BWX5 397 aaPredicted RBP18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 NMRK1Q9NWW6 199 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 DNAJC28Q9NX36 388 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 TLK1Q9UKI8 766 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 HS3ST4Q9Y661 456 aa18.64■□□□□ 0.57
SHKBP1-201ENST00000291842 MATN3O15232 486 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 TRIM13O60858 407 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 PAPOLAP51003 745 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 MAPRE1Q15691 268 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 PCID2Q5JVF3 399 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 CFAP61Q8NHU2 1237 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 GPR22Q99680 433 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 ACE2Q9BYF1 805 aaPredicted RBP18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 SMOC2Q9H3U7 446 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 CATSPERBQ9H7T0 1116 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 GOLGA8QA0A0J9YX86 632 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 GOLGA8OA6NCC3 632 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 E9PAM4 449 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 GOLGA8NF8WBI6 632 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 DCXO43602 365 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 CACNG3O60359 315 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 DDHD2O94830 711 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 SORBS2O94875 1100 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 PRKCZQ05513 592 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 SLC34A1Q06495 639 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 SEPT6Q14141 434 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 CNGA3Q16281 694 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 DNAL1Q4LDG9 190 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 BRMS1LQ5PSV4 323 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 MANEALQ5VSG8 457 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 TFAP2DQ7Z6R9 452 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 SCML4Q8N228 414 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 PNPLA1Q8N8W4 532 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 MAB21L3Q8N8X9 362 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 DNAJC9Q8WXX5 260 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 FCRL5Q96RD9 977 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 IL12RB2Q99665 862 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 FSD1LQ9BXM9 530 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 CDH19Q9H159 772 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 STN1Q9H668 368 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 RUVBL2Q9Y230 463 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 NLRC5Q86WI3 1866 aa18.63■□□□□ 0.57
SHKBP1-201ENST00000291842 NEBLO76041 1014 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 KLHL2O95198 593 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 ATP5BP06576 529 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 GRK4P32298 578 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 CYP2C18P33260 490 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 C1orf146Q5VVC0 180 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 MFSD6LQ8IWD5 586 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 TDRD5Q8NAT2 981 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 RHOJQ9H4E5 214 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 CYP4F11Q9HBI6 524 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 NVLO15381 856 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 CIB2O75838 187 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 ANXA9O76027 345 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 PDHA1P08559 390 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 SBK3P0C264 359 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 SLC35E2BP0CK96 405 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 ELNP15502 786 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 CD1EP15812 388 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 ALOX15P16050 662 aaPredicted RBP18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 PTPRDP23468 1912 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 MPSTP25325 297 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 ARNTP27540 789 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 VHLP40337 213 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 LRRC74BQ6ZQY2 392 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 CEP97Q8IW35 865 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 TMEM151AQ8N4L1 468 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 EFCAB3Q8N7B9 438 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 C1QTNF1Q9BXJ1 281 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 OXSMQ9NWU1 459 aa18.62■□□□□ 0.57
SHKBP1-201ENST00000291842 SORCS3Q9UPU3 1222 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms