RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 PCDH8O95206 1070 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 F9P00740 461 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 CTSLP07711 333 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 CYP11B1P15538 503 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 OR1E1P30953 314 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 SMAD1Q15797 465 aaKnown RBP18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 MIIPQ5JXC2 388 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 BRMS1LQ5PSV4 323 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 KLHDC7AQ5VTJ3 777 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 PDZD3Q86UT5 571 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 PDCD7Q8N8D1 485 aaKnown RBP18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 ARRDC3Q96B67 414 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 KLHDC7BQ96G42 594 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 CCDC114Q96M63 670 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 KDM4CQ9H3R0 1056 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 SAMSN1Q9NSI8 373 aaKnown RBP18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 E9PAM4 449 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 PRAMEF26H0Y7S4 382 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 I6L893 689 aaPredicted RBP18■□□□□ 0.47
SHKBP1-223ENST00000600552 ALOX15BO15296 676 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 YKT6O15498 198 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 RECQLP46063 649 aaPredicted RBP18■□□□□ 0.47
SHKBP1-223ENST00000600552 ATP11AP98196 1134 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 KCNMA1Q12791 1236 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 ARSIQ5FYB1 569 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 NAA35Q5VZE5 725 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 NOP9Q86U38 636 aaKnown RBP18■□□□□ 0.47
SHKBP1-223ENST00000600552 TRIM69Q86WT6 500 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 XYLT1Q86Y38 959 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 DRC7Q8IY82 874 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 CFAP57Q96MR6 1250 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 TAB2Q9NYJ8 693 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 TPX2Q9ULW0 747 aaKnown RBP18■□□□□ 0.47
SHKBP1-223ENST00000600552 DMTF1Q9Y222 760 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 PAXBP1Q9Y5B6 917 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 AK5Q9Y6K8 562 aa18■□□□□ 0.47
SHKBP1-223ENST00000600552 WDFY3Q8IZQ1 3526 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 RNF103O00237 685 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 MAGEC1O60732 1142 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 MMEP08473 750 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 THEGLP0DJG4 465 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 HNF1BP35680 557 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 FLT3P36888 993 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 VASPP50552 380 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 TAS2R38P59533 333 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 SEMG2Q02383 582 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 CAMK2BQ13554 666 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 SLC25A52Q3SY17 297 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 C5orf22Q49AR2 442 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 C6orf118Q5T5N4 469 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 PIP5KL1Q5T9C9 394 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 TMPRSS12Q86WS5 348 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 FAM131BQ86XD5 332 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 OXR1Q8N573 874 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 EMC1Q8N766 993 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 MSANTD4Q8NCY6 345 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 OR2A12Q8NGT7 310 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 CALN1Q9BXU9 219 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 CAAP1Q9H8G2 361 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 PREBQ9HCU5 417 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 CHMP5Q9NZZ3 219 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 DACH1Q9UI36 760 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 HS3ST2Q9Y278 367 aa17.99■□□□□ 0.47
SHKBP1-223ENST00000600552 DRGXA6NNA5 263 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 FFAR2O15552 330 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 RXRGP48443 463 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 ACADVLP49748 655 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 CLDN2P57739 230 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 TARDBPQ13148 414 aaKnown RBP eCLIP17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 MAPK8IP2Q13387 824 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 CDO1Q16878 200 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 HES3Q5TGS1 186 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 DPY19L2P1Q6NXN4 242 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 C22orf39Q6P5X5 142 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 SETD3Q86TU7 594 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 ZNF683Q8IZ20 524 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 RYBPQ8N488 228 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 NUP62CLQ9H1M0 184 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 ERVMER34-1Q9H9K5 563 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 ATP13A1Q9HD20 1204 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 IL36AQ9UHA7 158 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 PCDHGA1Q9Y5H4 931 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 ACTL7AQ9Y615 435 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 ATRXP46100 2492 aa17.98■□□□□ 0.47
SHKBP1-223ENST00000600552 FREM2Q5SZK8 3169 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 C10orf142B7Z368 130 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 LEFTY1O75610 366 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 GFPT2O94808 682 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 PRNPP04156 253 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 UCHL3P15374 230 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 ERCC5P28715 1186 aaPredicted RBP17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 NUDT1P36639 197 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 GABRB2P47870 512 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 DAB2P98082 770 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 CCDC15Q0P6D6 951 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 RAB6CQ53S08 254 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 ZNF542PQ5EBM4 170 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 SEL1L3Q68CR1 1132 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 TRNP1Q6NT89 227 aa17.97■□□□□ 0.47
SHKBP1-223ENST00000600552 RWDD4Q6NW29 188 aaKnown RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms