RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	SOWAHC	Q53LP3	525 aa	Predicted RBP	10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	C2CD6	Q53TS8	623 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	BRMS1L	Q5PSV4	323 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	ARTN	Q5T4W7	220 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	FAM102A	Q5T9C2	384 aa	Predicted RBP	10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	TAF3	Q5VWG9	929 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	DPY19L2P1	Q6NXN4	242 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	FBXL19	Q6PCT2	694 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	IQCH	Q86VS3	1027 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	OXR1	Q8N573	874 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	MLKL	Q8NB16	471 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	OR2A12	Q8NGT7	310 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	GRIN3A	Q8TCU5	1115 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	ARRDC3	Q96B67	414 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	DCBLD2	Q96PD2	775 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	TNKS2	Q9H2K2	1166 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	WDCP	Q9H6R7	721 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	PREB	Q9HCU5	417 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	SCUBE2	Q9NQ36	999 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	MPP6	Q9NZW5	540 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	FHOD1	Q9Y613	1164 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776		A0A087WV48	116 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	PRAMEF26	H0Y7S4	382 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	GOLGA8S	H3BPF8	625 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	TRIM38	O00635	465 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	ENDOD1	O94919	500 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	C1S	P09871	688 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	PRKCSH	P14314	528 aa	Predicted RBP	10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	CHRNA3	P32297	505 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	HNF1B	P35680	557 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	NUDT1	P36639	197 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	FLT3	P36888	993 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	SNX16	P57768	344 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	KRT83	P78385	493 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	SEMG2	Q02383	582 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	TARDBP	Q13148	414 aa	Known RBP eCLIP	10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	DRAP1	Q14919	205 aa	Predicted RBP	10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	ZNF284	Q2VY69	593 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	DPCR1	Q3MIW9	517 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	VWA3B	Q502W6	1294 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	MIIP	Q5JXC2	388 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	TRNP1	Q6NT89	227 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	XYLT1	Q86Y38	959 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	ZDHHC17	Q8IUH5	632 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	DCAF4L2	Q8NA75	395 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	TMEM145	Q8NBT3	493 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	TMEM35B	Q8NCS4	154 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	OR7D4	Q8NG98	312 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	NT5C3B	Q969T7	300 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	NXPE2	Q96DL1	559 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	BBC3	Q96PG8	261 aa	Predicted RBP	10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	C2orf49	Q9BVC5	232 aa	Predicted RBP	10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	PDCL3	Q9H2J4	239 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	NDST4	Q9H3R1	872 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	RRN3	Q9NYV6	651 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	STAP1	Q9ULZ2	295 aa		10.78	□□□□□ -0.68
LSM4-205	ENST00000597776	URB1	O60287	2271 aa	Known RBP	10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	DOCK9	Q9BZ29	2069 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	DRGX	A6NNA5	263 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776		E9PAM4	449 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	PES1	O00541	588 aa	Known RBP	10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	SIGLEC6	O43699	453 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	MAGEC1	O60732	1142 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	SRGAP2	O75044	1071 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	THEGL	P0DJG4	465 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	CYP11B1	P15538	503 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	CKMT2	P17540	419 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	OR1E1	P30953	314 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	CDH5	P33151	784 aa	Predicted RBP	10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	GABRB2	P47870	512 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	CLDN2	P57739	230 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	BPIFB4	P59827	614 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	KCNMA1	Q12791	1236 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	OVGP1	Q12889	678 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	PROX2	Q3B8N5	592 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	SLC25A52	Q3SY17	297 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	ARSI	Q5FYB1	569 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	C6orf118	Q5T5N4	469 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	SEL1L3	Q68CR1	1132 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	C22orf39	Q6P5X5	142 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	LRRC31	Q6UY01	552 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	SETD3	Q86TU7	594 aa	Predicted RBP	10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	NOP9	Q86U38	636 aa	Known RBP	10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	HORMAD1	Q86X24	394 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	ERICH1	Q86X53	443 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	FAM131B	Q86XD5	332 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	SLC25A45	Q8N413	288 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	OR13H1	Q8NG92	308 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	C18orf8	Q96DM3	657 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	PGAP3	Q96FM1	320 aa	Predicted RBP	10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	KLHDC7B	Q96G42	594 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	CCDC114	Q96M63	670 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	CFAP57	Q96MR6	1250 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	TUBGCP2	Q9BSJ2	902 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	SPON2	Q9BUD6	331 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	DYRK4	Q9NR20	520 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	UCKL1	Q9NWZ5	548 aa		10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	ZFR2	Q9UPR6	939 aa	Known RBP	10.77	□□□□□ -0.69
LSM4-205	ENST00000597776	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.77	□□□□□ -0.69

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