RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RAD1O60671 282 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 PDGFAP04085 211 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 PRR29P0C7W0 189 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 C1orf61Q13536 156 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 INPP5JQ15735 1006 aaPredicted RBP16.68■□□□□ 0.26
VPS53-218ENST00000575207 TPRG1LQ5T0D9 272 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 OR6C4Q8NGE1 309 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 PMEPA1Q969W9 287 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 RPL10LQ96L21 214 aaKnown RBP16.68■□□□□ 0.26
VPS53-218ENST00000575207 LRRC61Q9BV99 259 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 CLPBQ9H078 707 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 TCEAL2Q9H3H9 227 aaPredicted RBP16.68■□□□□ 0.26
VPS53-218ENST00000575207 PCIF1Q9H4Z3 704 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 GPN2Q9H9Y4 310 aaPredicted RBP16.68■□□□□ 0.26
VPS53-218ENST00000575207 CYP4F12Q9HCS2 524 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 GULP1Q9UBP9 304 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 IPO11Q9UI26 975 aaKnown RBP16.68■□□□□ 0.26
VPS53-218ENST00000575207 ZFR2Q9UPR6 939 aaKnown RBP16.68■□□□□ 0.26
VPS53-218ENST00000575207 PCDHB13Q9Y5F0 798 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 ZNF233A6NK53 670 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 ATICP31939 592 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 TOB1P50616 345 aaPredicted RBP16.67■□□□□ 0.26
VPS53-218ENST00000575207 COPB1P53618 953 aaKnown RBP16.67■□□□□ 0.26
VPS53-218ENST00000575207 MYL6P60660 151 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 PDE1CQ14123 709 aaPredicted RBP16.67■□□□□ 0.26
VPS53-218ENST00000575207 TMEM259Q4ZIN3 620 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 EFHC2Q5JST6 749 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 CCNJLQ8IV13 435 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 C12orf29Q8N999 325 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 KYQ8NBH2 561 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 FRS2Q8WU20 508 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 OR8D1Q8WZ84 308 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 KIAA1143Q96AT1 154 aaPredicted RBP16.67■□□□□ 0.26
VPS53-218ENST00000575207 VRTNQ9H8Y1 702 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 FAM49BQ9NUQ9 324 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 AKAP7Q9P0M2 348 aaPredicted RBP16.67■□□□□ 0.26
VPS53-218ENST00000575207 APPL1Q9UKG1 709 aa16.67■□□□□ 0.26
VPS53-218ENST00000575207 HBS1LQ9Y450 684 aaKnown RBP16.67■□□□□ 0.26
VPS53-218ENST00000575207 C1QTNF3-AMACRE9PGA6 284 aa16.66■□□□□ 0.26
VPS53-218ENST00000575207 KIAA0391O15091 583 aaKnown RBP16.66■□□□□ 0.26
VPS53-218ENST00000575207 IRAK2O43187 625 aa16.66■□□□□ 0.26
VPS53-218ENST00000575207 ATP1A1-AS1Q5TC04 95 aa16.66■□□□□ 0.26
VPS53-218ENST00000575207 RNF219Q5W0B1 726 aaPredicted RBP16.66■□□□□ 0.26
VPS53-218ENST00000575207 RFWD3Q6PCD5 774 aa16.66■□□□□ 0.26
VPS53-218ENST00000575207 SFR1Q86XK3 245 aa16.66■□□□□ 0.26
VPS53-218ENST00000575207 CBWD2Q8IUF1 395 aa16.66■□□□□ 0.26
VPS53-218ENST00000575207 ARHGAP18Q8N392 663 aa16.66■□□□□ 0.26
VPS53-218ENST00000575207 SYAP1Q96A49 352 aaPredicted RBP16.66■□□□□ 0.26
VPS53-218ENST00000575207 INTS2Q9H0H0 1204 aaKnown RBP16.66■□□□□ 0.26
VPS53-218ENST00000575207 SDCBP2Q9H190 292 aa16.66■□□□□ 0.26
VPS53-218ENST00000575207 BLOC1S4Q9NUP1 217 aa16.66■□□□□ 0.26
VPS53-218ENST00000575207 TRPM6Q9BX84 2022 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 REC8O95072 547 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 FGF3P11487 239 aaPredicted RBP16.65■□□□□ 0.26
VPS53-218ENST00000575207 TSHRP16473 764 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 ADORA2BP29275 332 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 NNMTP40261 264 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 STK19P49842 368 aaPredicted RBP16.65■□□□□ 0.26
VPS53-218ENST00000575207 ZRANB3Q5FWF4 1079 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 FSCBQ5H9T9 825 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 PHF19Q5T6S3 580 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 SEL1L3Q68CR1 1132 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 LVRNQ6Q4G3 990 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 MMS22LQ6ZRQ5 1243 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 XYLT1Q86Y38 959 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 STARD8Q92502 1023 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 SEMA6CQ9H3T2 930 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 TLK1Q9UKI8 766 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 PILRAQ9UKJ1 303 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 PNMA8BQ9ULN7 279 aaPredicted RBP16.65■□□□□ 0.26
VPS53-218ENST00000575207 B3GALT1Q9Y5Z6 326 aa16.65■□□□□ 0.26
VPS53-218ENST00000575207 HGSO14964 777 aaPredicted RBP16.64■□□□□ 0.25
VPS53-218ENST00000575207 MCF2LO15068 1137 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 ALOX15BO15296 676 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 SLC26A4O43511 780 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 FAM155BO75949 473 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 MOCS3O95396 460 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 TCN2P20062 427 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 VARSP26640 1264 aaKnown RBP16.64■□□□□ 0.25
VPS53-218ENST00000575207 MCM6Q14566 821 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 NADK2Q4G0N4 442 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 FAM133BQ5BKY9 247 aaKnown RBP16.64■□□□□ 0.25
VPS53-218ENST00000575207 GDF7Q7Z4P5 450 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 PHACTR4Q8IZ21 702 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 DDA1Q9BW61 102 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 MRPL44Q9H9J2 332 aaKnown RBP16.64■□□□□ 0.25
VPS53-218ENST00000575207 STIM2Q9P246 746 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 CEP83Q9Y592 693 aa16.64■□□□□ 0.25
VPS53-218ENST00000575207 CROCCQ5TZA2 2017 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 LOC101059948A0A1B0GTJ6 334 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 RAD51BO15315 384 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 RFPL1O75677 317 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 PNLIPP16233 465 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 YWHAGP61981 247 aaKnown RBP eCLIP16.63■□□□□ 0.25
VPS53-218ENST00000575207 CCDC15Q0P6D6 951 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 TRPC3Q13507 836 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 PTK2BQ14289 1009 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 ARHGAP44Q17R89 818 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 PRR30Q53SZ7 412 aaPredicted RBP16.63■□□□□ 0.25
VPS53-218ENST00000575207 C16orf46Q6P387 395 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms