RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 HLA-BQ31612 363 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 C6orf118Q5T5N4 469 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 SDE2Q6IQ49 451 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 KIAA1324Q6UXG2 1013 aaKnown RBP14.28□□□□□ -0.12
CLN3-235ENST00000568497 NUDT18Q6ZVK8 323 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 ADIPOR2Q86V24 386 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 ZNF683Q8IZ20 524 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 CHPFQ8IZ52 775 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 HJURPQ8NCD3 748 aaPredicted RBP14.28□□□□□ -0.12
CLN3-235ENST00000568497 OR8K1Q8NGG5 319 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 TRIM62Q9BVG3 475 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 PCSK1NQ9UHG2 260 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 GGA2Q9UJY4 613 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 BTBD3Q9Y2F9 522 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 PCDHGB2Q9Y5G2 931 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 ACTL7AQ9Y615 435 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 A0A1W2PQF6 199 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 TMEM110-MUSTN1A8MSY1 372 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 LUC7L3O95232 432 aaKnown RBP14.27□□□□□ -0.13
CLN3-235ENST00000568497 PABPC1P11940 636 aaKnown RBP14.27□□□□□ -0.13
CLN3-235ENST00000568497 SCNN1AP37088 669 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 STK19P49842 368 aaPredicted RBP14.27□□□□□ -0.13
CLN3-235ENST00000568497 GALCP54803 685 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 PREPLQ4J6C6 727 aaPredicted RBP14.27□□□□□ -0.13
CLN3-235ENST00000568497 MBLAC2Q68D91 279 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 TXNRD3NBQ6F5E7 133 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 PLEKHA7Q6IQ23 1121 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 ANKS1BQ7Z6G8 1248 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 CCAR2Q8N163 923 aaKnown RBP14.27□□□□□ -0.13
CLN3-235ENST00000568497 TC2NQ8N9U0 490 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 DNASE2BQ8WZ79 361 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 SYN2Q92777 582 aaPredicted RBP14.27□□□□□ -0.13
CLN3-235ENST00000568497 DNAJC7Q99615 494 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 NDFIP2Q9NV92 336 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 NENFQ9UMX5 172 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 CABIN1Q9Y6J0 2220 aa14.27□□□□□ -0.13
CLN3-235ENST00000568497 COL6A6A6NMZ7 2263 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 AKR1B15C9JRZ8 316 aaPredicted RBP14.26□□□□□ -0.13
CLN3-235ENST00000568497 BCAT2O15382 392 aaPredicted RBP14.26□□□□□ -0.13
CLN3-235ENST00000568497 TNFSF14O43557 240 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 LATS1O95835 1130 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 JUPP14923 745 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 VAV1P15498 845 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 GLDCP23378 1020 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 CD6P30203 668 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 HNF1BP35680 557 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 CDH18Q13634 790 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 ZNF234Q14588 700 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 ASTE1Q2TB18 679 aaPredicted RBP14.26□□□□□ -0.13
CLN3-235ENST00000568497 CXorf57Q6NSI4 855 aaKnown RBP14.26□□□□□ -0.13
CLN3-235ENST00000568497 ALKBH5Q6P6C2 394 aaKnown RBP14.26□□□□□ -0.13
CLN3-235ENST00000568497 PCSK4Q6UW60 755 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 LEKR1Q6ZMV7 388 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 SND1Q7KZF4 910 aaKnown RBP eCLIP14.26□□□□□ -0.132e-7■■■□□ 14.9
CLN3-235ENST00000568497 AZIN2Q96A70 460 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 RPL10LQ96L21 214 aaKnown RBP14.26□□□□□ -0.13
CLN3-235ENST00000568497 GPR174Q9BXC1 333 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 ISCUQ9H1K1 167 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 NHEJ1Q9H9Q4 299 aaPredicted RBP14.26□□□□□ -0.13
CLN3-235ENST00000568497 CD248Q9HCU0 757 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 ELOVL2Q9NXB9 296 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 SLC12A6Q9UHW9 1150 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 STARD13Q9Y3M8 1113 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 STON1Q9Y6Q2 735 aa14.26□□□□□ -0.13
CLN3-235ENST00000568497 A0A0D9SEW6 157 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 TMEM191CA6NGB0 347 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 ERVH48-1M5A8F1 160 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 SNAP91O60641 907 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 ENDOD1O94919 500 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 ADRA1BP35368 520 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 GJC1P36383 396 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 PTPN9P43378 593 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 ZNF143P52747 638 aaPredicted RBP14.25□□□□□ -0.13
CLN3-235ENST00000568497 GSCP56915 257 aaPredicted RBP14.25□□□□□ -0.13
CLN3-235ENST00000568497 PTPRNQ16849 979 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 PITRM1Q5JRX3 1037 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 RNF219Q5W0B1 726 aaPredicted RBP14.25□□□□□ -0.13
CLN3-235ENST00000568497 RWDD4Q6NW29 188 aaKnown RBP14.25□□□□□ -0.13
CLN3-235ENST00000568497 TMPRSS12Q86WS5 348 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 DRC7Q8IY82 874 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 OR7D4Q8NG98 312 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 CENPIQ92674 756 aaPredicted RBP14.25□□□□□ -0.13
CLN3-235ENST00000568497 PGAP3Q96FM1 320 aaPredicted RBP14.25□□□□□ -0.13
CLN3-235ENST00000568497 TOE1Q96GM8 510 aaKnown RBP14.25□□□□□ -0.13
CLN3-235ENST00000568497 NUP85Q9BW27 656 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 SLCO3A1Q9UIG8 710 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 MFHAS1Q9Y4C4 1052 aa14.25□□□□□ -0.13
CLN3-235ENST00000568497 NUMA1Q14980 2115 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 KNL1Q8NG31 2342 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 SLC28A2O43868 658 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 AKR1B10O60218 316 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 GZMAP12544 262 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 IL1R2P27930 398 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 HNRNPH3P31942 346 aaKnown RBP14.24□□□□□ -0.13
CLN3-235ENST00000568497 GRK6P43250 576 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 CLDN6P56747 220 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 CCDC173Q0VFZ6 552 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 SMTNL2Q2TAL5 461 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 FNDC3BQ53EP0 1204 aaKnown RBP14.24□□□□□ -0.13
CLN3-235ENST00000568497 BRMS1LQ5PSV4 323 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms