RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SNAP91O60641 907 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 RAMP2O60895 175 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 SEMA4FO95754 770 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 IL1BP01584 269 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 FAM228BP0C875 321 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 SRCP12931 536 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 SLC8A1P32418 973 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 PCK1P35558 622 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 RECQLP46063 649 aaPredicted RBP13.7□□□□□ -0.22
CLK3-216ENST00000564468 NUMBP49757 651 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 CCDC15Q0P6D6 951 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 PIGHQ14442 188 aaPredicted RBP13.7□□□□□ -0.22
CLK3-216ENST00000564468 POLD3Q15054 466 aaPredicted RBP13.7□□□□□ -0.22
CLK3-216ENST00000564468 TRIM61Q5EBN2 209 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 ARTNQ5T4W7 220 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 FAM72AQ5TYM5 149 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 FAM72DQ6L9T8 149 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 SLC23A3Q6PIS1 610 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 SARM1Q6SZW1 724 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 NLRP14Q86W24 1093 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 FAM72BQ86X60 149 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 CNGA4Q8IV77 575 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 OR7D4Q8NG98 312 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 DNASE2BQ8WZ79 361 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 DNAJC7Q99615 494 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 TRIM5Q9C035 493 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 CEP44Q9C0F1 390 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 ARHGAP20Q9P2F6 1191 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 DNAI1Q9UI46 699 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 FZD4Q9ULV1 537 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 TPX2Q9ULW0 747 aaKnown RBP13.7□□□□□ -0.22
CLK3-216ENST00000564468 SLC6A14Q9UN76 642 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 AP4E1Q9UPM8 1137 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 CEP295Q9C0D2 2601 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 ASCC3Q8N3C0 2202 aaKnown RBP13.7□□□□□ -0.22
CLK3-216ENST00000564468 KNL1Q8NG31 2342 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 ZSCAN5CA6NGD5 496 aaPredicted RBP13.69□□□□□ -0.22
CLK3-216ENST00000564468 LRRC72A6NJI9 287 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 WASH4PA8MWX3 477 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 RNASEH2AO75792 299 aaKnown RBP13.69□□□□□ -0.22
CLK3-216ENST00000564468 SERPINF2P08697 491 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 ACSL1P33121 698 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 EIF4A3P38919 411 aaKnown RBP13.69□□□□□ -0.22
CLK3-216ENST00000564468 PSMD8P48556 350 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 YBEYP58557 167 aaPredicted RBP13.69□□□□□ -0.22
CLK3-216ENST00000564468 TPI1P60174 286 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 SLC18A3Q16572 532 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 DCAF12L1Q5VU92 463 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 DNAAF5Q86Y56 855 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 PYROXD2Q8N2H3 581 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 HDDC3Q8N4P3 179 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 RTL3Q8N8U3 475 aaKnown RBP13.69□□□□□ -0.22
CLK3-216ENST00000564468 ARHGEF2Q92974 986 aaKnown RBP13.69□□□□□ -0.22
CLK3-216ENST00000564468 EDEM2Q9BV94 578 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 ACE2Q9BYF1 805 aaPredicted RBP13.69□□□□□ -0.22
CLK3-216ENST00000564468 THAP2Q9H0W7 228 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 SMOC1Q9H4F8 434 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 DHX35Q9H5Z1 703 aaKnown RBP13.69□□□□□ -0.22
CLK3-216ENST00000564468 ABHD10Q9NUJ1 306 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 TMEM74BQ9NUR3 256 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 PCSK1NQ9UHG2 260 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 IP6K2Q9UHH9 426 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 LCMT1Q9UIC8 334 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 FAM208BQ5VWN6 2430 aa13.69□□□□□ -0.22
CLK3-216ENST00000564468 A0A1B0GTW7 788 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 A0A1W2PP55 124 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 MYO1FO00160 1098 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 SLC7A4O43246 635 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 DAPK3O43293 454 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 AKR1B10O60218 316 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 BNIP3LO60238 219 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 GDF9O60383 454 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 ZMPSTE24O75844 475 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 MT-CO1P00395 513 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 PRNPP04156 253 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 CFIP05156 583 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 CYP1A2P05177 515 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 SYPP08247 313 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 H2AFZP0C0S5 128 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 GOT1P17174 413 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 MIPP30301 263 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 SERPINH1P50454 418 aaKnown RBP13.68□□□□□ -0.22
CLK3-216ENST00000564468 ATXN3P54252 364 aaPredicted RBP13.68□□□□□ -0.22
CLK3-216ENST00000564468 IRX4P78413 519 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 GFPT1Q06210 699 aaPredicted RBP13.68□□□□□ -0.22
CLK3-216ENST00000564468 ZNF252P-AS1Q0IIN9 211 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 SEMA3BQ13214 749 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 MAPK8IP2Q13387 824 aaPredicted RBP13.68□□□□□ -0.22
CLK3-216ENST00000564468 BOLA3Q53S33 107 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 STPG1Q5TH74 334 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 DAB2IPQ5VWQ8 1189 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 TCEAL6Q6IPX3 200 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 C22orf39Q6P5X5 142 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 Q6ZVU0 165 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 H2AFVQ71UI9 128 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 ZNF354CQ86Y25 554 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 PCDH20Q8N6Y1 951 aaKnown RBP13.68□□□□□ -0.22
CLK3-216ENST00000564468 CTNNBL1Q8WYA6 563 aaPredicted RBP13.68□□□□□ -0.22
CLK3-216ENST00000564468 TCEAL3Q969E4 200 aa13.68□□□□□ -0.22
CLK3-216ENST00000564468 ISG20Q96AZ6 181 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 266.9 ms