RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ARRB1P49407 418 aaPredicted RBP19.48■□□□□ 0.71
VPS35-202ENST00000561713 NXPH1P58417 271 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 DEUP1Q05D60 604 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 SULT2A1Q06520 285 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 RTP5Q14D33 572 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 TCP11X2Q5H9J9 407 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 NAA35Q5VZE5 725 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 OR8D1Q8WZ84 308 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 SPAG5Q96R06 1193 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 PSMB7Q99436 277 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 NRSN2Q9GZP1 204 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 ARHGEF38Q9NXL2 777 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 MPP6Q9NZW5 540 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 STAP1Q9ULZ2 295 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 MYLKQ15746 1914 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 TK2O00142 265 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 ATXN7O15265 892 aaPredicted RBP19.47■□□□□ 0.71
VPS35-202ENST00000561713 RRP8O43159 456 aaKnown RBP19.47■□□□□ 0.71
VPS35-202ENST00000561713 MT-CO1P00395 513 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 GLDCP23378 1020 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 CXCR3P49682 368 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 PLK1P53350 603 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 NOMO3P69849 1222 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 CNTN1Q12860 1018 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 DLG2Q15700 870 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 RAB6CQ53S08 254 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 SFMBT2Q5VUG0 894 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 LINGO4Q6UY18 593 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 PHLDB2Q86SQ0 1253 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 ERICH1Q86X53 443 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 SPATS2Q86XZ4 545 aaKnown RBP19.47■□□□□ 0.71
VPS35-202ENST00000561713 ZNF683Q8IZ20 524 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 SH2D3CQ8N5H7 860 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 EPS8L1Q8TE68 723 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 CPA5Q8WXQ8 436 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 C18orf8Q96DM3 657 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 CFAP57Q96MR6 1250 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 FCRL3Q96P31 734 aaPredicted RBP19.47■□□□□ 0.71
VPS35-202ENST00000561713 MYOCQ99972 504 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 RAB6CQ9H0N0 254 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 GANQ9H2C0 597 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 WDCPQ9H6R7 721 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 METTL5Q9NRN9 209 aaKnown RBP19.47■□□□□ 0.71
VPS35-202ENST00000561713 VPS51Q9UID3 782 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 TRPM6Q9BX84 2022 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 TENM4Q6N022 2769 aa19.47■□□□□ 0.71
VPS35-202ENST00000561713 TBC1D3DA0A087WVF3 549 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 TBC1D3IA0A087WXS9 549 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 TBC1D3EA0A087X179 549 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 TBC1D3KA0A087X1G2 549 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 TBC1D3FA6NER0 549 aaPredicted RBP19.46■□□□□ 0.71
VPS35-202ENST00000561713 TBC1D3LB9A6J9 549 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 K7ERQ8 282 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 EPHB6O15197 1021 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 ATP9BO43861 1147 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 CLDN11O75508 207 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 GFPT2O94808 682 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 GJB6O95452 261 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 TBC1D3HP0C7X1 549 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 SRCP12931 536 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 RRM1P23921 792 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 CDH4P55283 916 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 SNX16P57768 344 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 BPIFB4P59827 614 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 AGBL4Q5VU57 503 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 TBC1D3GQ6DHY5 549 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 TBC1D3CQ6IPX1 549 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 KANSL1Q7Z3B3 1105 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 FAM131BQ86XD5 332 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 ZDHHC17Q8IUH5 632 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 TBC1D3Q8IZP1 549 aaPredicted RBP19.46■□□□□ 0.71
VPS35-202ENST00000561713 EMC1Q8N766 993 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 VPS16Q9H269 839 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 ERVMER34-1Q9H9K5 563 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 CA5BQ9Y2D0 317 aa19.46■□□□□ 0.71
VPS35-202ENST00000561713 A0A0D9SEW6 157 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 RNF103O00237 685 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 SMAD6O43541 496 aaKnown RBP19.45■□□□□ 0.7
VPS35-202ENST00000561713 LATO43561 262 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 CTSLP07711 333 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 GABRB2P47870 512 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 RXRGP48443 463 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 OXCT1P55809 520 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 KRT31Q15323 416 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 SLC45A4Q5BKX6 768 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 BRMS1LQ5PSV4 323 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 OR7D4Q8NG98 312 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 LMBRD1Q9NUN5 540 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 ARHGAP20Q9P2F6 1191 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 NOCTQ9UK39 431 aaKnown RBP19.45■□□□□ 0.7
VPS35-202ENST00000561713 TBC1D30Q9Y2I9 924 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 PTPRQQ9UMZ3 2332 aa19.45■□□□□ 0.7
VPS35-202ENST00000561713 PLRG1O43660 514 aaKnown RBP19.44■□□□□ 0.7
VPS35-202ENST00000561713 BRINP1O60477 761 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 ZNF18P17022 549 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 CKMT2P17540 419 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 EEF1GP26641 437 aaKnown RBP19.44■□□□□ 0.7
VPS35-202ENST00000561713 CDO1Q16878 200 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 SLC25A52Q3SY17 297 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 C5orf22Q49AR2 442 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms