RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 TMEM248Q9NWD8 314 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 BEX4Q9NWD9 120 aaPredicted RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 SH3BP4Q9P0V3 963 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 PEMTQ9UBM1 199 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 HSPB7Q9UBY9 170 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ADD3Q9UEY8 706 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 MKLN1Q9UL63 735 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 PCDHGB4Q9UN71 923 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ENTPD2Q9Y5L3 495 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 TEX13CA0A0J9YWL9 993 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 A0A1W2PQM1 296 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TTC34A8MYJ7 566 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TEX22C9J3V5 150 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 MCIDASD6RGH6 385 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 K7ENM7 598 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 AP3D1O14617 1153 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 KCNAB3O43448 404 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ZNF500O60304 480 aaPredicted RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 GUCY1B2O75343 617 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TULP3O75386 442 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 GCATO75600 419 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 C1QL1O75973 258 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TMEM63AO94886 807 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 SEC31AO94979 1220 aaKnown RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 CBX6O95503 412 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ADAP00813 363 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 SPARCP09486 303 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ACADMP11310 421 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TNNT1P13805 278 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 HOXB6P17509 224 aaKnown RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 CHMP24386 653 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ABCD1P33897 745 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 HOXD13P35453 343 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 RAD52P43351 418 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ABCG1P45844 678 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 SOX2P48431 317 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ZNF81P51508 661 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ADPRHP54922 357 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ARF3P61204 181 aaPredicted RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 PSMC6P62333 389 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 BLOC1S1P78537 153 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ARF1P84077 181 aaKnown RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 RHAGQ02094 409 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 NUCB1Q02818 461 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 NEXNQ0ZGT2 675 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TBL3Q12788 808 aaKnown RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 PDE1CQ14123 709 aaPredicted RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 EIF4A2Q14240 407 aaKnown RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 SLC18A3Q16572 532 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TBC1D25Q3MII6 688 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ANXA2RQ3ZCQ2 193 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TMEM119Q4V9L6 283 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 SPATA1Q5VX52 437 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 HIST2H2BCQ6DN03 193 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 HIST2H2BDQ6DRA6 164 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TMEM81Q6P7N7 255 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 GJB7Q6PEY0 223 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TMEM88Q6PEY1 159 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 INO80CQ6PI98 192 aaPredicted RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 ZNF474Q6S9Z5 364 aaPredicted RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 CYP20A1Q6UW02 462 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 C17orf99Q6UX52 265 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 CRELD2Q6UXH1 353 aaPredicted RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 TRIM72Q6ZMU5 477 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 CCDC129Q6ZRS4 1044 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 GALNT5Q7Z7M9 940 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 OR8H2Q8N162 312 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 WDTC1Q8N5D0 677 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 SCAIQ8N9R8 606 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ZMIZ2Q8NF64 920 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TBC1D5Q92609 795 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 CUL5Q93034 780 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 KLHL29Q96CT2 875 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 DAZAP1Q96EP5 407 aaKnown RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 RSRC1Q96IZ7 334 aaKnown RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 HIC2Q96JB3 615 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 RITA1Q96K30 269 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 WDFY2Q96P53 400 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 SERINC2Q96SA4 455 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 CD180Q99467 661 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 MXD3Q9BW11 206 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TM2D2Q9BX73 214 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 RNF26Q9BY78 433 aaPredicted RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 SLC29A3Q9BZD2 475 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TRIM2Q9C040 744 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 FTOQ9C0B1 505 aaKnown RBP eCLIP1.77□□□□□ -2.13
USP3-209ENST00000558925 NUAK2Q9H093 628 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 KLK15Q9H2R5 256 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TTC12Q9H892 705 aaPredicted RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 SFXN1Q9H9B4 322 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 SCPEP1Q9HB40 452 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 CPNE5Q9HCH3 593 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TXNRD2Q9NNW7 524 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 SNTG1Q9NSN8 517 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ANKEF1Q9NU02 776 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 C20orf141Q9NUB4 165 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 ARL8BQ9NVJ2 186 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TAS2R10Q9NYW0 307 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 KCND2Q9NZV8 630 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TBC1D14Q9P2M4 693 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms