RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NAPGQ99747 312 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 C2orf49Q9BVC5 232 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 TMEM245Q9H330 911 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 C10orf88Q9H8K7 445 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 PRDM16Q9HAZ2 1276 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 IPO11Q9UI26 975 aaKnown RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 STON1Q9Y6Q2 735 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 NCOR1O75376 2440 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 CTAGE9A4FU28 777 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 ZNF821O75541 412 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-227ENST00000557269 TJP3O95049 919 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 ASLP04424 464 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 SRCP12931 536 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 AOC1P19801 751 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 CETN2P41208 172 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 MRPS21P82921 87 aaKnown RBP13.08□□□□□ -0.32
SHMT2-227ENST00000557269 OTUD4Q01804 1114 aaKnown RBP13.08□□□□□ -0.32
SHMT2-227ENST00000557269 SULT2A1Q06520 285 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 LRRC32Q14392 662 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 CYTH1Q15438 398 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 SIX1Q15475 284 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-227ENST00000557269 FNDC3BQ53EP0 1204 aaKnown RBP13.08□□□□□ -0.32
SHMT2-227ENST00000557269 CHPFQ8IZ52 775 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 SYNPOQ8N3V7 929 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 RASGEF1CQ8N431 466 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 SH2D3CQ8N5H7 860 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 ATPAF2Q8N5M1 289 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 TMEM105Q8N8V8 129 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 TXNDC5Q8NBS9 432 aaKnown RBP13.08□□□□□ -0.32
SHMT2-227ENST00000557269 ACTL9Q8TC94 416 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 KCNV2Q8TDN2 545 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 FRS2Q8WU20 508 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 UCMAQ8WVF2 138 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 P3H4Q92791 437 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 ZNF419Q96HQ0 510 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-227ENST00000557269 PBKQ96KB5 322 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 HPCAL4Q9UM19 191 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 PLA2G4CQ9UP65 541 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 HS3ST2Q9Y278 367 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 FCF1Q9Y324 198 aaKnown RBP13.08□□□□□ -0.32
SHMT2-227ENST00000557269 RAD54BQ9Y620 910 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 ATG2BQ96BY7 2078 aa13.08□□□□□ -0.32
SHMT2-227ENST00000557269 CHURC1-FNTBB4DL54 471 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 APOC4-APOC2K7ER74 178 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 ATP9BO43861 1147 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 APOC2P02655 101 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 FGGP02679 453 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 SRPRAP08240 638 aaKnown RBP13.07□□□□□ -0.32
SHMT2-227ENST00000557269 COL9A1P20849 921 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 CASQ1P31415 396 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 NR2C2P49116 596 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 SERPINH1P50454 418 aaKnown RBP13.07□□□□□ -0.32
SHMT2-227ENST00000557269 CLCN5P51795 746 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 IL10RBQ08334 325 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 PPIDQ08752 370 aaKnown RBP13.07□□□□□ -0.32
SHMT2-227ENST00000557269 SLC10A7Q0GE19 358 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 MTAPQ13126 283 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 NOMO1Q15155 1222 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 RETSATQ6NUM9 610 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 KIAA1211LQ6NV74 962 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 SERPINA13PQ6UXR4 307 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 ZC3H18Q86VM9 953 aaKnown RBP13.07□□□□□ -0.32
SHMT2-227ENST00000557269 ATP11CQ8NB49 1132 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 CCNYQ8ND76 341 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 ATG4AQ8WYN0 398 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 HDAC11Q96DB2 347 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 TSGA13Q96PP4 275 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 GABRG3Q99928 467 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 CHRDQ9H2X0 955 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 SP110Q9HB58 689 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 CD248Q9HCU0 757 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 SLC25A13Q9UJS0 675 aa13.07□□□□□ -0.32
SHMT2-227ENST00000557269 A0A1W2PQF6 199 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 MUSKO15146 869 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 NCAM2O15394 837 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 GJB3O75712 270 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 TMCC1O94876 653 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 PRLRP16471 622 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 MX2P20592 715 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 CCNCP24863 283 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 NTSR1P30989 418 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 RPS9P46781 194 aaKnown RBP13.06□□□□□ -0.32
SHMT2-227ENST00000557269 VASPP50552 380 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-227ENST00000557269 SLC20A2Q08357 652 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 PDK1Q15118 436 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 PRKD1Q15139 912 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-227ENST00000557269 DLG2Q15700 870 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 LONRF2Q1L5Z9 754 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 ACCSLQ4AC99 568 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 CCDC181Q5TID7 509 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 TMEM92Q6UXU6 159 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 BMP8AQ7Z5Y6 402 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 PGBD5Q8N414 524 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 FBXL6Q8N531 539 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 C1orf54Q8WWF1 131 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 PTPRN2Q92932 1015 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 VOPP1Q96AW1 172 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 TNKS2Q9H2K2 1166 aa13.06□□□□□ -0.32
SHMT2-227ENST00000557269 UBA2Q9UBT2 640 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-227ENST00000557269 KCNK1O00180 336 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms