RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 ACTL7BQ9Y614 415 aa11.45□□□□□ -0.58
SHMT2-216ENST00000554975 HECTD1Q9ULT8 2610 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 hCG_1818297A0A087WSY0 165 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 LRRD1A4D1F6 860 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 C2orf78A6NCI8 922 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 C5orf60A6NFR6 353 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 ARHGAP33O14559 1287 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 ADAM23O75077 832 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 CDH16O75309 829 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 TTC4O95801 387 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 ERBB2P04626 1255 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 KRT3P12035 628 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 PCSK1P29120 753 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 TIE1P35590 1138 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 KCNJ1P48048 391 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 SLC6A11P48066 632 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 LHX1P48742 406 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 ITGA8P53708 1063 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 PSMC1P62191 440 aaKnown RBP11.44□□□□□ -0.58
SHMT2-216ENST00000554975 SNX1Q13596 522 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 SLC29A2Q14542 456 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 DDR2Q16832 855 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 CCDC142Q17RM4 750 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 GKAP1Q5VSY0 366 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-216ENST00000554975 TAX1BP1Q86VP1 789 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 OSTM1Q86WC4 334 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 C12orf40Q86WS4 652 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 SLC41A1Q8IVJ1 513 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 CACNA2D3Q8IZS8 1091 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 ZCCHC9Q8N567 271 aaKnown RBP11.44□□□□□ -0.58
SHMT2-216ENST00000554975 TOP6BLQ8N6T0 577 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 ARL14EPQ8N8R7 260 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-216ENST00000554975 ANKS4BQ8N8V4 417 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 CXorf38Q8TB03 319 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 SPPL2BQ8TCT7 592 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 SH3RF2Q8TEC5 729 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 HMGB4Q8WW32 186 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 SPACA7Q96KW9 195 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 XPO6Q96QU8 1125 aaKnown RBP11.44□□□□□ -0.58
SHMT2-216ENST00000554975 SELENOSQ9BQE4 189 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 PLCD4Q9BRC7 762 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 ACTR5Q9H9F9 607 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-216ENST00000554975 DNAAF2Q9NVR5 837 aaKnown RBP11.44□□□□□ -0.58
SHMT2-216ENST00000554975 ASNSD1Q9NWL6 643 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 NXF1Q9UBU9 619 aaKnown RBP11.44□□□□□ -0.58
SHMT2-216ENST00000554975 LGALS13Q9UHV8 139 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.44□□□□□ -0.58
SHMT2-216ENST00000554975 PCDHB5Q9Y5E4 795 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 FAM169AQ9Y6X4 670 aa11.44□□□□□ -0.58
SHMT2-216ENST00000554975 TP53BP1Q12888 1972 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-216ENST00000554975 TCRBV21S2A2A0A5A6 115 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 M0QYV0 167 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 SCAMP3O14828 347 aaKnown RBP11.43□□□□□ -0.58
SHMT2-216ENST00000554975 MCF2LO15068 1137 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 ALDH1A2O94788 518 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 CST3P01034 146 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-216ENST00000554975 CYP17A1P05093 508 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 CKMP06732 381 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 TSHRP16473 764 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 PCK1P35558 622 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 SCNN1AP37088 669 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 GABRB2P47870 512 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 RAD23BP54727 409 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 SMARCB1Q12824 385 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 TFDP2Q14188 446 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 RASA2Q15283 850 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 CNGA2Q16280 664 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 NFE2Q16621 373 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-216ENST00000554975 SOWAHAQ2M3V2 549 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 WDR72Q3MJ13 1102 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 PTPN20Q4JDL3 420 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 TNFAIP8L3Q5GJ75 292 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 INTS6LQ5JSJ4 861 aaKnown RBP11.43□□□□□ -0.58
SHMT2-216ENST00000554975 ERMARDQ5T6L9 678 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 PPP1R21Q6ZMI0 780 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 BBS12Q6ZW61 710 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 CENPUQ71F23 418 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 TADA2BQ86TJ2 420 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 CPNE8Q86YQ8 564 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 SPATA2LQ8IUW3 424 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-216ENST00000554975 NAXDQ8IW45 347 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 C2orf15Q8WU43 125 aaKnown RBP11.43□□□□□ -0.58
SHMT2-216ENST00000554975 ATG4AQ8WYN0 398 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 RNF25Q96BH1 459 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-216ENST00000554975 CHMP6Q96FZ7 201 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 TMEM176AQ96HP8 235 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 CCT8L2Q96SF2 557 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 TBCBQ99426 244 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 ACBD6Q9BR61 282 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 NT5C1AQ9BXI3 368 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 FRMD8Q9BZ67 464 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-216ENST00000554975 TRIM7Q9C029 511 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 SNX25Q9H3E2 840 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 INTS9Q9NV88 658 aaKnown RBP11.43□□□□□ -0.58
SHMT2-216ENST00000554975 ZNF148Q9UQR1 794 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 NEU2Q9Y3R4 380 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 MYLKQ15746 1914 aa11.43□□□□□ -0.58
SHMT2-216ENST00000554975 GOLGA6L7A0A1B0GV03 622 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 CFAP69A5D8W1 941 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 ZNF487B1APH4 448 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms