RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SH2D3CQ8N5H7 860 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 LMO3Q8TAP4 145 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 SPATA20Q8TB22 786 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 IFI44Q8TCB0 444 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 ARRDC3Q96B67 414 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 FAM149B1Q96BN6 582 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 GRAMD1AQ96CP6 724 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 BMFQ96LC9 184 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 TIGD1Q96MW7 591 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 FEM1AQ9BSK4 669 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 DUSP23Q9BVJ7 150 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 CALN1Q9BXU9 219 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 OSBPL2Q9H1P3 480 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 PCDHB4Q9Y5E5 795 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 PCDHGA8Q9Y5G5 932 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 CHD5Q8TDI0 1954 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 TLN1Q9Y490 2541 aaKnown RBP13.17□□□□□ -0.3
USP28-212ENST00000544750 PMS2P1A4D2B8 440 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 NEMP2A6NFY4 417 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 NEBLO76041 1014 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 SRCP12931 536 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 KRT10P13645 584 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 OXCT1P55809 520 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 CLDN2P57739 230 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 ARL13BQ3SXY8 428 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 ACCSLQ4AC99 568 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 TMEM259Q4ZIN3 620 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 TTC39BQ5VTQ0 682 aaPredicted RBP13.16□□□□□ -0.3
USP28-212ENST00000544750 FBXL22Q6P050 247 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 CLEC14AQ86T13 490 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 ATP6V0D2Q8N8Y2 350 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 MAPK15Q8TD08 544 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 ATXN7L3BQ96GX2 97 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 SLC4A5Q9BY07 1137 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 POPDC2Q9HBU9 364 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP28-212ENST00000544750 SLC25A13Q9UJS0 675 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 HS3ST2Q9Y278 367 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 HS3ST3A1Q9Y663 406 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 UNC13CQ8NB66 2214 aa13.16□□□□□ -0.3
USP28-212ENST00000544750 EME2A4GXA9 379 aaPredicted RBP13.15□□□□□ -0.3
USP28-212ENST00000544750 EFSO43281 561 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 MT-CO1P00395 513 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 CSF2P04141 144 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 AKT2P31751 481 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 PRCPP42785 496 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 ACADSBP45954 432 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 FMO5P49326 533 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 CSRP3P50461 194 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 PMS1P54277 932 aaKnown RBP13.15□□□□□ -0.3
USP28-212ENST00000544750 HNRNPKP61978 463 aaKnown RBP eCLIP13.15□□□□□ -0.3
USP28-212ENST00000544750 CENPCQ03188 943 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 SRSF1Q07955 248 aaKnown RBP eCLIP13.15□□□□□ -0.3
USP28-212ENST00000544750 CLN3Q13286 438 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 FZD2Q14332 565 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 C5orf22Q49AR2 442 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 COBLL1Q53SF7 1204 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 ZNF542PQ5EBM4 170 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 ZCCHC8Q6NZY4 707 aaKnown RBP13.15□□□□□ -0.3
USP28-212ENST00000544750 TMEM110Q86TL2 294 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 DCP2Q8IU60 420 aaKnown RBP13.15□□□□□ -0.3
USP28-212ENST00000544750 EXD3Q8N9H8 876 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 ZNF548Q8NEK5 533 aaPredicted RBP13.15□□□□□ -0.3
USP28-212ENST00000544750 TMIEQ8NEW7 156 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 OR2A12Q8NGT7 310 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 FAM174AQ8TBP5 190 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 STK32AQ8WU08 396 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 ABCG4Q9H172 646 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 KLF15Q9UIH9 416 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 CNTN6Q9UQ52 1028 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 TBC1D30Q9Y2I9 924 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 CSNK1G3Q9Y6M4 447 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 LRP4O75096 1905 aa13.15□□□□□ -0.3
USP28-212ENST00000544750 LRRK1Q38SD2 2015 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 SPTY2D1-AS1A0A0U1RR47 76 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 POM121BA6NF01 834 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 A6NNZ2 444 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 CASC3O15234 703 aaKnown RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 NME1P15531 152 aaKnown RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 ZNF18P17022 549 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 RBMS1P29558 406 aaKnown RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 CHRNA3P32297 505 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 MLLT3P42568 568 aaPredicted RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 PDX1P52945 283 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 YWHAZP63104 245 aaKnown RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 FKBP3Q00688 224 aaKnown RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 C1QBPQ07021 282 aaKnown RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 ZNF177Q13360 481 aaPredicted RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 FGL2Q14314 439 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 MEA1Q16626 185 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 LINC00303Q3SY05 128 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 RABGAP1LQ5R372 815 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 SEL1L3Q68CR1 1132 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 ANKRD40Q6AI12 368 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 OR6B2Q6IFH4 312 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 GUSBP11Q6P575 273 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 KYAT3Q6YP21 454 aaKnown RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 Q6ZSR6 202 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 ELOA2Q8IYF1 753 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms