RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SNX15Q9NRS6 342 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 GMIPQ9P107 970 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 HEY2Q9UBP5 337 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 HAO1Q9UJM8 370 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 NEFHP12036 1026 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 SERPINB8P50452 374 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 TNK2Q07912 1038 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 CTXN3Q4LDR2 81 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 FASTKD1Q53R41 847 aaKnown RBP14.02□□□□□ -0.16
RTN3-210ENST00000540798 STRA8Q7Z7C7 330 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 KCNMB4Q86W47 210 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 KIRREL3Q8IZU9 778 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 TTC9BQ8N6N2 239 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 SPATA22Q8NHS9 363 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 ATP2A3Q93084 1043 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 PTCD3Q96EY7 689 aaKnown RBP14.02□□□□□ -0.16
RTN3-210ENST00000540798 SPATA17Q96L03 361 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 APOL2Q9BQE5 337 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 GPR62Q9BZJ7 368 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 MRM3Q9HC36 420 aaKnown RBP14.02□□□□□ -0.16
RTN3-210ENST00000540798 HMX1Q9NP08 348 aaPredicted RBP14.02□□□□□ -0.16
RTN3-210ENST00000540798 THAP1Q9NVV9 213 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 COMMD8Q9NX08 183 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 UBP1Q9NZI7 540 aa14.02□□□□□ -0.16
RTN3-210ENST00000540798 IGLV3-27P01718 113 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 HLA-DQB2P05538 268 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 NMBRP28336 390 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 PAPOLAP51003 745 aaKnown RBP14.02□□□□□ -0.17
RTN3-210ENST00000540798 NDST2P52849 883 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 FSTL4Q6MZW2 842 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 ZNF280DQ6N043 979 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 CNTN4Q8IWV2 1026 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 FAM126BQ8IXS8 530 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 SLAIN1Q8ND83 568 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 USP33Q8TEY7 942 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 TMEM248Q9NWD8 314 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 TXNDC16Q9P2K2 825 aa14.02□□□□□ -0.17
RTN3-210ENST00000540798 ATP9BO43861 1147 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 MYL2P10916 166 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 RHOQP17081 205 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 GEMP55040 296 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 TBX4P57082 545 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 PDE1BQ01064 536 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 KRT72Q14CN4 511 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 DEFB115Q30KQ5 88 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 MS4A13Q5J8X5 152 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 PCID2Q5JVF3 399 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 C16orf46Q6P387 395 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 NOD2Q9HC29 1040 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.01□□□□□ -0.17
RTN3-210ENST00000540798 MPP6Q9NZW5 540 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 HBS1LQ9Y450 684 aaKnown RBP14.01□□□□□ -0.17
RTN3-210ENST00000540798 MIA3Q5JRA6 1907 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 CHUKO15111 745 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 MPOP05164 745 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 TPH1P17752 444 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 SERPINB3P29508 390 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 STX3Q13277 289 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 TCTN1Q2MV58 587 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 HSP90AA5PQ58FG0 334 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 PPM1JQ5JR12 505 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 FAM171A1Q5VUB5 890 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 PDPK2PQ6A1A2 396 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 PTCD2Q8WV60 388 aaKnown RBP14.01□□□□□ -0.17
RTN3-210ENST00000540798 RAB3IPQ96QF0 476 aaPredicted RBP14.01□□□□□ -0.17
RTN3-210ENST00000540798 ZNF395Q9H8N7 513 aaPredicted RBP14.01□□□□□ -0.17
RTN3-210ENST00000540798 NSMCE4AQ9NXX6 385 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 ZNF212Q9UDV6 495 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 TIMM44O43615 452 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 SIN3BO75182 1162 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 TRPA1O75762 1119 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 RTN3O95197 1032 aaPredicted RBP14.01□□□□□ -0.17
RTN3-210ENST00000540798 CBX6O95503 412 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 MT-CYBP00156 380 aaPredicted RBP14.01□□□□□ -0.17
RTN3-210ENST00000540798 ATP5BP06576 529 aaKnown RBP14.01□□□□□ -0.17
RTN3-210ENST00000540798 TYK2P29597 1187 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 GPR17Q13304 367 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 TRIP4Q15650 581 aaPredicted RBP14.01□□□□□ -0.17
RTN3-210ENST00000540798 CCDC153Q494R4 210 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 PKN3Q6P5Z2 889 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 ATAD1Q8NBU5 361 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 DBF4BQ8NFT6 615 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 SIKE1Q9BRV8 207 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 TUBB6Q9BUF5 446 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 OLA1Q9NTK5 396 aaKnown RBP14.01□□□□□ -0.17
RTN3-210ENST00000540798 C20orf96Q9NUD7 363 aaPredicted RBP14.01□□□□□ -0.17
RTN3-210ENST00000540798 TMEM216Q9P0N5 145 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 PCDHB7Q9Y5E2 793 aa14.01□□□□□ -0.17
RTN3-210ENST00000540798 CHD5Q8TDI0 1954 aa14□□□□□ -0.17
RTN3-210ENST00000540798 CCDC195A0A1B0GUA6 201 aa14□□□□□ -0.17
RTN3-210ENST00000540798 MTMR11A4FU01 709 aa14□□□□□ -0.17
RTN3-210ENST00000540798 MOCS2O96007 188 aaPredicted RBP14□□□□□ -0.17
RTN3-210ENST00000540798 ZDHHC11BP0C7U3 371 aa14□□□□□ -0.17
RTN3-210ENST00000540798 HADHAP40939 763 aa14□□□□□ -0.17
RTN3-210ENST00000540798 SLC11A1P49279 550 aa14□□□□□ -0.17
RTN3-210ENST00000540798 RASSF2P50749 326 aa14□□□□□ -0.17
RTN3-210ENST00000540798 SMARCB1Q12824 385 aa14□□□□□ -0.17
RTN3-210ENST00000540798 RSPO2Q6UXX9 243 aaPredicted RBP14□□□□□ -0.17
RTN3-210ENST00000540798 RANBP10Q6VN20 620 aa14□□□□□ -0.17
RTN3-210ENST00000540798 AZIN2Q96A70 460 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms