RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 C22orf39Q6P5X5 142 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 DCUN1D2Q6PH85 259 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 SLFN11Q7Z7L1 901 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 NLRP14Q86W24 1093 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 CCDC185Q8N715 623 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 ORAI3Q9BRQ5 295 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 RAB6CQ9H0N0 254 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 ATP13A1Q9HD20 1204 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 PARVAQ9NVD7 372 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 CEP192Q8TEP8 1941 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 CHD8Q9HCK8 2581 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 ASCC3Q8N3C0 2202 aaKnown RBP11.82□□□□□ -0.52
RTN3-209ENST00000538995 A0A1W2PQJ5 194 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 CBX4O00257 560 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 LATO43561 262 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 PLRG1O43660 514 aaKnown RBP11.82□□□□□ -0.52
RTN3-209ENST00000538995 ZMPSTE24O75844 475 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 MT-CO1P00395 513 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 PRNPP04156 253 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 CD59P13987 128 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 L1CAMP32004 1257 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 HTR7P34969 479 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 SERPINH1P50454 418 aaKnown RBP11.82□□□□□ -0.52
RTN3-209ENST00000538995 FANCCQ00597 558 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 BNC1Q01954 994 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 KLHL30Q0D2K2 578 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 MAMLD1Q13495 774 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 NUMA1Q14980 2115 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 SKOR2Q2VWA4 1001 aaPredicted RBP11.82□□□□□ -0.52
RTN3-209ENST00000538995 AGBL4Q5VU57 503 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 E4F1Q66K89 784 aaPredicted RBP11.82□□□□□ -0.52
RTN3-209ENST00000538995 PLEKHA7Q6IQ23 1121 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 RWDD4Q6NW29 188 aaKnown RBP11.82□□□□□ -0.52
RTN3-209ENST00000538995 LUZP1Q86V48 1076 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 DRC7Q8IY82 874 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 PCDH20Q8N6Y1 951 aaKnown RBP11.82□□□□□ -0.52
RTN3-209ENST00000538995 DEFB124Q8NES8 71 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 TMIEQ8NEW7 156 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 OR7D4Q8NG98 312 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 OR2A12Q8NGT7 310 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 OR2I1PQ8NGU4 316 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 OR14C36Q8NHC7 312 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 PIP4K2CQ8TBX8 421 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 SKA1Q96BD8 255 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 TRIM11Q96F44 468 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 EPAS1Q99814 870 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 ACE2Q9BYF1 805 aaPredicted RBP11.82□□□□□ -0.52
RTN3-209ENST00000538995 MAGEH1Q9H213 219 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 HAUS4Q9H6D7 363 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 PREBQ9HCU5 417 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 TAS2R14Q9NYV8 317 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 ANGPTL2Q9UKU9 493 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 SARDHQ9UL12 918 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 PCDHGB2Q9Y5G2 931 aa11.82□□□□□ -0.52
RTN3-209ENST00000538995 EPG5Q9HCE0 2579 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 A0A1B0GVT2 93 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 FAM47DPA6NHR8 397 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 EIF3CLB5ME19 914 aaKnown RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 FAM72CH0Y354 149 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 GOLGA6L19H0YKK7 550 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 K7ERQ8 282 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 GIPC1O14908 333 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 VILLO15195 856 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 DFNA5O60443 496 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 RAMP2O60895 175 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 MYBL1P10243 752 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 CHRNA3P32297 505 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 PBX1P40424 430 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 RECQLP46063 649 aaPredicted RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 CSNK1EP49674 416 aaKnown RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 RPL7AP62424 266 aaKnown RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 ARF5P84085 180 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 FAM72AQ5TYM5 149 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 FAM72DQ6L9T8 149 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 LINGO4Q6UY18 593 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 ZNF571Q7Z3V5 609 aaPredicted RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 TMC6Q7Z403 805 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 ADAT2Q7Z6V5 191 aaKnown RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 TRIM69Q86WT6 500 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 FAM72BQ86X60 149 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 PLPP6Q8IY26 295 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 RTL3Q8N8U3 475 aaKnown RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 FNIP1Q8TF40 1166 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 SYN2Q92777 582 aaPredicted RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 ISG20Q96AZ6 181 aaKnown RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 PPP1R16AQ96I34 528 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 EIF3CQ99613 913 aaKnown RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 SPON2Q9BUD6 331 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 GAREM1Q9H706 876 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 DONSONQ9NYP3 566 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 ANKRD6Q9Y2G4 727 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 BZW2Q9Y6E2 419 aaKnown RBP11.81□□□□□ -0.52
RTN3-209ENST00000538995 SLCO1B1Q9Y6L6 691 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 SCINQ9Y6U3 715 aa11.81□□□□□ -0.52
RTN3-209ENST00000538995 NYNRINQ9P2P1 1898 aaKnown RBP11.8□□□□□ -0.52
RTN3-209ENST00000538995 ZSCAN5CA6NGD5 496 aaPredicted RBP11.8□□□□□ -0.52
RTN3-209ENST00000538995 WASH4PA8MWX3 477 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 DDX3XO00571 662 aaKnown RBP eCLIP11.8□□□□□ -0.526e-22■■■□□ 17.7
RTN3-209ENST00000538995 FGF10O15520 208 aaPredicted RBP11.8□□□□□ -0.52
RTN3-209ENST00000538995 SMAD6O43541 496 aaKnown RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms