RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 LRCH1Q9Y2L9 728 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 Q9Y3F1 56 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 PTPRDP23468 1912 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 TTC3P53804 2025 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 MYADML2A6NDP7 307 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 TRIM13O60858 407 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 ODC1P11926 461 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 MRPS35P82673 323 aaKnown RBP13.39□□□□□ -0.27
LDLR-203ENST00000535915 COG7P83436 770 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 GRM3Q14832 879 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 UPP1Q16831 310 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 RALGPS1Q5JS13 557 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 PM20D1Q6GTS8 502 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 AGMOQ6ZNB7 445 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 LINC00523Q86TU6 105 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 MYLK4Q86YV6 388 aaPredicted RBP13.39□□□□□ -0.27
LDLR-203ENST00000535915 DQX1Q8TE96 717 aaKnown RBP13.39□□□□□ -0.27
LDLR-203ENST00000535915 IRGQQ8WZA9 623 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 CMTM5Q96DZ9 223 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 TTC1Q99614 292 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 CDH19Q9H159 772 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 TASP1Q9H6P5 420 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 FNDC1Q4ZHG4 1894 aaPredicted RBP13.38□□□□□ -0.27
LDLR-203ENST00000535915 LOC100653049A0A140TA62 436 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 AP3B1O00203 1094 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 DCXO43602 365 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 KRT34O76011 436 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 RPL9P32969 192 aaKnown RBP13.38□□□□□ -0.27
LDLR-203ENST00000535915 ANO4Q32M45 955 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 ARHGAP36Q6ZRI8 547 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 CNTD1Q8N815 330 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 SPATA22Q8NHS9 363 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 SHKBP1Q8TBC3 707 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 ZSCAN18Q8TBC5 510 aaPredicted RBP13.38□□□□□ -0.27
LDLR-203ENST00000535915 RTP3Q9BQQ7 232 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 CYP4F11Q9HBI6 524 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 TLK1Q9UKI8 766 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 GIT1Q9Y2X7 761 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 MIA3Q5JRA6 1907 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.38□□□□□ -0.27
LDLR-203ENST00000535915 TMEM114B3SHH9 223 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 B3GAT3O94766 335 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 BAG2O95816 211 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 EPHB1P54762 984 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 GNASQ5JWF2 1037 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 THEMIS2Q5TEJ8 643 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 EPGNQ6UW88 154 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 METTL23Q86XA0 190 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 TDRD5Q8NAT2 981 aaKnown RBP13.38□□□□□ -0.27
LDLR-203ENST00000535915 HASPINQ8TF76 798 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 FAM136AQ96C01 138 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 TSNARE1Q96NA8 513 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 CHST12Q9NRB3 414 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 NDE1Q9NXR1 346 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 MYO16Q9Y6X6 1858 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 NLRC5Q86WI3 1866 aa13.38□□□□□ -0.27
LDLR-203ENST00000535915 NYNRINQ9P2P1 1898 aaKnown RBP13.38□□□□□ -0.27
LDLR-203ENST00000535915 A6NHS1 94 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 E9PBE3 544 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 PSMD3O43242 534 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 KLHL41O60662 606 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 MT-CYBP00156 380 aaPredicted RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 POMCP01189 267 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 CHRNA1P02708 482 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 RGS2P41220 211 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 BRCC3P46736 316 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 TAF1CQ15572 869 aaPredicted RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 SLC9B1Q4ZJI4 515 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 FSCBQ5H9T9 825 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 PHTF2Q8N3S3 785 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 ATPAF2Q8N5M1 289 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 DPF3Q92784 378 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 ZNF184Q99676 751 aaPredicted RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 ACBD6Q9BR61 282 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 MCMBPQ9BTE3 642 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 DMAP1Q9NPF5 467 aaPredicted RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 OXSMQ9NWU1 459 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 NSMCE4AQ9NXX6 385 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 AAR2Q9Y312 384 aaKnown RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 SCN10AQ9Y5Y9 1956 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 TK2O00142 265 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 PHGDHO43175 533 aaKnown RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 H2AFYO75367 372 aaKnown RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 AVPR1AP37288 418 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 HADHAP40939 763 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 PGGT1BP53609 377 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 USP10Q14694 798 aaKnown RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 POU6F1Q14863 301 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 GDF6Q6KF10 455 aaPredicted RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 CXCL17Q6UXB2 119 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 ZC3HC1Q86WB0 502 aaKnown RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 IPMKQ8NFU5 416 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 SCAMP5Q8TAC9 235 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 MOCOSQ96EN8 888 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 SCYL1Q96KG9 808 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 GPR22Q99680 433 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 TBL1YQ9BQ87 522 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 KIFC1Q9BW19 673 aa13.37□□□□□ -0.27
LDLR-203ENST00000535915 GATA5Q9BWX5 397 aaPredicted RBP13.37□□□□□ -0.27
LDLR-203ENST00000535915 ACE2Q9BYF1 805 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms