RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 FASNP49327 2511 aaKnown RBP11.64□□□□□ -0.55
VPS28-214ENST00000531032 SMG1Q96Q15 3661 aaKnown RBP11.64□□□□□ -0.55
VPS28-214ENST00000531032 IGLV3-10A0A075B6K4 115 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 DRGXA6NNA5 263 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 SNAP91O60641 907 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 RNGTTO60942 597 aaKnown RBP11.63□□□□□ -0.55
VPS28-214ENST00000531032 F9P00740 461 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 RHOCP08134 193 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 JUPP14923 745 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 GABRB2P47870 512 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 SULT1E1P49888 294 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 CLCN6P51797 869 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 CLDN6P56747 220 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 BPIFB4P59827 614 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 STAT4Q14765 748 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 SOWAHCQ53LP3 525 aaPredicted RBP11.63□□□□□ -0.55
VPS28-214ENST00000531032 MIIPQ5JXC2 388 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 ARTNQ5T4W7 220 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 C6orf118Q5T5N4 469 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 ACBD5Q5T8D3 534 aaPredicted RBP11.63□□□□□ -0.55
VPS28-214ENST00000531032 HES3Q5TGS1 186 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 NEK5Q6P3R8 708 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 ATP11CQ8NB49 1132 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 TMEM35BQ8NCS4 154 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 TMIEQ8NEW7 156 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 C1orf74Q96LT6 269 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 CCDC114Q96M63 670 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.63□□□□□ -0.55
VPS28-214ENST00000531032 FARP1Q9Y4F1 1045 aaPredicted RBP11.63□□□□□ -0.55
VPS28-214ENST00000531032 DOCK4Q8N1I0 1966 aa11.63□□□□□ -0.55
VPS28-214ENST00000531032 A0A0D9SEW6 157 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 K7ERQ8 282 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 SMAD6O43541 496 aaKnown RBP11.62□□□□□ -0.55
VPS28-214ENST00000531032 BNIP3LO60238 219 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 PRNPP04156 253 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 CKMT2P17540 419 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 RRM1P23921 792 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 ACP1P24666 158 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 CHRNA3P32297 505 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 RNASE9P60153 205 aaKnown RBP11.62□□□□□ -0.55
VPS28-214ENST00000531032 DEUP1Q05D60 604 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 CCDC15Q0P6D6 951 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 ZNF284Q2VY69 593 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 PROX2Q3B8N5 592 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 SLC25A52Q3SY17 297 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 BNIPLQ7Z465 357 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 FAM114A1Q8IWE2 563 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 CACTIN-AS1Q8N1I8 211 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 RFFLQ8WZ73 363 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 ARRDC3Q96B67 414 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 C18orf8Q96DM3 657 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 KLHDC7BQ96G42 594 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 LRIG1Q96JA1 1093 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 TBCBQ99426 244 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 NRSN2Q9GZP1 204 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 NDST4Q9H3R1 872 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 MPP6Q9NZW5 540 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 ZNF212Q9UDV6 495 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 CA5BQ9Y2D0 317 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 PAXBP1Q9Y5B6 917 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 SNX10Q9Y5X0 201 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 MYLKQ15746 1914 aa11.62□□□□□ -0.55
VPS28-214ENST00000531032 A0A1W2PQU0 124 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 RNF103O00237 685 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 KPNA3O00505 521 aaPredicted RBP11.61□□□□□ -0.55
VPS28-214ENST00000531032 TRIM38O00635 465 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 SLC31A1O15431 190 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 SDC3O75056 442 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 LSM8O95777 96 aaKnown RBP11.61□□□□□ -0.55
VPS28-214ENST00000531032 THEGLP0DJG4 465 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 CYP11B1P15538 503 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 PRLRP16471 622 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 OR1E1P30953 314 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 FLT3P36888 993 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 TARDBPQ13148 414 aaKnown RBP eCLIP11.61□□□□□ -0.55
VPS28-214ENST00000531032 ZNF211Q13398 564 aaPredicted RBP11.61□□□□□ -0.55
VPS28-214ENST00000531032 RAPGEF1Q13905 1077 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 DRAP1Q14919 205 aaPredicted RBP11.61□□□□□ -0.55
VPS28-214ENST00000531032 RTP5Q14D33 572 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 TPD52L1Q16890 204 aaPredicted RBP11.61□□□□□ -0.55
VPS28-214ENST00000531032 VWA3BQ502W6 1294 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 FAM102AQ5T9C2 384 aaPredicted RBP11.61□□□□□ -0.55
VPS28-214ENST00000531032 TRNP1Q6NT89 227 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 C22orf39Q6P5X5 142 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 LRRC31Q6UY01 552 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 LINGO4Q6UY18 593 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 ZNF783Q6ZMS7 281 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 TFAP2DQ7Z6R9 452 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 HORMAD1Q86X24 394 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 XYLT1Q86Y38 959 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 SLC25A45Q8N413 288 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 CHST14Q8NCH0 376 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 HAPLN3Q96S86 360 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 TUBGCP2Q9BSJ2 902 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 NAA15Q9BXJ9 866 aaKnown RBP11.61□□□□□ -0.55
VPS28-214ENST00000531032 HDAC8Q9BY41 377 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 DYRK4Q9NR20 520 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 TMPRSS4Q9NRS4 437 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 TMEM59LQ9UK28 342 aa11.61□□□□□ -0.55
VPS28-214ENST00000531032 FHOD1Q9Y613 1164 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms