RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 NUMBP49757 651 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 NOVA1P51513 510 aaKnown RBP21.09■□□□□ 0.97
VPS28-206ENST00000526734 ZBED6P86452 979 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 GRIK2Q13002 908 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 MAMLD1Q13495 774 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 C22orf39Q6P5X5 142 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 TMC6Q7Z403 805 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 NLRP14Q86W24 1093 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 AADATQ8N5Z0 425 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 OR7D4Q8NG98 312 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 FNIP1Q8TF40 1166 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 EPAS1Q99814 870 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 SPON2Q9BUD6 331 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 DONSONQ9NYP3 566 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 DDX3XO00571 662 aaKnown RBP eCLIP21.08■□□□□ 0.976e-7■■□□□ 12.4
VPS28-206ENST00000526734 ZMPSTE24O75844 475 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 CER1O95813 267 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 PRNPP04156 253 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 DRD3P35462 400 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 NUDT1P36639 197 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 SERPINH1P50454 418 aaKnown RBP21.08■□□□□ 0.97
VPS28-206ENST00000526734 ADPRHP54922 357 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 SEMA3BQ13214 749 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 HNRNPDQ14103 355 aaKnown RBP21.08■□□□□ 0.97
VPS28-206ENST00000526734 TDRD12Q587J7 1177 aaKnown RBP21.08■□□□□ 0.97
VPS28-206ENST00000526734 SCYL2Q6P3W7 929 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 NCEH1Q6PIU2 408 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 PCDH20Q8N6Y1 951 aaKnown RBP21.08■□□□□ 0.97
VPS28-206ENST00000526734 TMIEQ8NEW7 156 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 PIP4K2CQ8TBX8 421 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 ACE2Q9BYF1 805 aaPredicted RBP21.08■□□□□ 0.97
VPS28-206ENST00000526734 MRPL47Q9HD33 250 aaKnown RBP21.08■□□□□ 0.97
VPS28-206ENST00000526734 FZD10Q9ULW2 581 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 HPCAL4Q9UM19 191 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 CAPN11Q9UMQ6 739 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 NEU3Q9UQ49 428 aa21.08■□□□□ 0.97
VPS28-206ENST00000526734 PI4KAP42356 2102 aa21.08■□□□□ 0.96
VPS28-206ENST00000526734 NYNRINQ9P2P1 1898 aaKnown RBP21.07■□□□□ 0.96
VPS28-206ENST00000526734 A0A1W2PPC4 97 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 ZSCAN5CA6NGD5 496 aaPredicted RBP21.07■□□□□ 0.96
VPS28-206ENST00000526734 TMCO5BA8MYB1 307 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 C10orf142B7Z368 130 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 FAM72CH0Y354 149 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 FGF10O15520 208 aaPredicted RBP21.07■□□□□ 0.96
VPS28-206ENST00000526734 RAMP2O60895 175 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 MT-CO1P00395 513 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 FTLP02792 175 aaPredicted RBP21.07■□□□□ 0.96
VPS28-206ENST00000526734 IGHV4-34P06331 123 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 ZNF883P0CG24 379 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 KCNA4P22459 653 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 PSMA2P25787 234 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 CHRNA3P32297 505 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 FAM72AQ5TYM5 149 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 FAM72DQ6L9T8 149 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 PSAPL1Q6NUJ1 521 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 FAM72BQ86X60 149 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 RTL3Q8N8U3 475 aaKnown RBP21.07■□□□□ 0.96
VPS28-206ENST00000526734 OR2A12Q8NGT7 310 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 OR14C36Q8NHC7 312 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 ISG20Q96AZ6 181 aaKnown RBP21.07■□□□□ 0.96
VPS28-206ENST00000526734 SKA1Q96BD8 255 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 ISCUQ9H1K1 167 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 CATSPERBQ9H7T0 1116 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 TM9SF3Q9HD45 589 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 FSCN3Q9NQT6 498 aa21.07■□□□□ 0.96
VPS28-206ENST00000526734 CNOT8Q9UFF9 292 aaKnown RBP21.07■□□□□ 0.96
VPS28-206ENST00000526734 LUC7L2Q9Y383 392 aaKnown RBP21.07■□□□□ 0.96
VPS28-206ENST00000526734 CACNA1EQ15878 2313 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 NCOR2Q9Y618 2525 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 TMEM191CA6NGB0 347 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 FAM47DPA6NHR8 397 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 GJB3O75712 270 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 RNF8O76064 485 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 SERPING1P05155 500 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 EPHB2P29323 1055 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 RACK1P63244 317 aaKnown RBP21.06■□□□□ 0.96
VPS28-206ENST00000526734 PIP4P1Q86T03 277 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 PLPP6Q8IY26 295 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 ARHGEF2Q92974 986 aaKnown RBP21.06■□□□□ 0.96
VPS28-206ENST00000526734 ZNF653Q96CK0 615 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 PPP1R16AQ96I34 528 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 DYRK4Q9NR20 520 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 IFNKQ9P0W0 207 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.06■□□□□ 0.965e-9■■■□□ 15.2
VPS28-206ENST00000526734 DOCK4Q8N1I0 1966 aa21.06■□□□□ 0.96
VPS28-206ENST00000526734 WASH4PA8MWX3 477 aa21.05■□□□□ 0.96
VPS28-206ENST00000526734 K7ERQ8 282 aa21.05■□□□□ 0.96
VPS28-206ENST00000526734 CBFA2T2O43439 604 aa21.05■□□□□ 0.96
VPS28-206ENST00000526734 PLRG1O43660 514 aaKnown RBP21.05■□□□□ 0.96
VPS28-206ENST00000526734 BNIP3LO60238 219 aa21.05■□□□□ 0.96
VPS28-206ENST00000526734 ZNF135P52742 658 aaPredicted RBP21.05■□□□□ 0.96
VPS28-206ENST00000526734 YBEYP58557 167 aaPredicted RBP21.05■□□□□ 0.96
VPS28-206ENST00000526734 ARF5P84085 180 aa21.05■□□□□ 0.96
VPS28-206ENST00000526734 OGDHQ02218 1023 aa21.05■□□□□ 0.96
VPS28-206ENST00000526734 LINGO4Q6UY18 593 aa21.05■□□□□ 0.96
VPS28-206ENST00000526734 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.05■□□□□ 0.96
VPS28-206ENST00000526734 PSTKQ8IV42 348 aaKnown RBP21.05■□□□□ 0.96
VPS28-206ENST00000526734 CASKIN2Q8WXE0 1202 aa21.05■□□□□ 0.96
VPS28-206ENST00000526734 PREBQ9HCU5 417 aa21.05■□□□□ 0.96
VPS28-206ENST00000526734 DNAI1Q9UI46 699 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms