RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 GGCXP38435 758 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 MAGEA1P43355 309 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 SGSHP51688 502 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 AFF3P51826 1226 aaKnown RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 RPS24P62847 133 aaKnown RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 CCDC173Q0VFZ6 552 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 SCAPQ12770 1279 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 CDH18Q13634 790 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 AUHQ13825 339 aaKnown RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 PIGHQ14442 188 aaPredicted RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 PTPRNQ16849 979 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 TTC31Q49AM3 519 aaPredicted RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 EFHC2Q5JST6 749 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 MBLAC2Q68D91 279 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 FBXL22Q6P050 247 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 SCYL2Q6P3W7 929 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 SLFN11Q7Z7L1 901 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 ADIPOR2Q86V24 386 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 MFN1Q8IWA4 741 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 RHOT2Q8IXI1 618 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 PNPLA1Q8N8W4 532 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 C1orf74Q96LT6 269 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 EIF3CQ99613 913 aaKnown RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 PACSIN1Q9BY11 444 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 C6orf106Q9H6K1 298 aaPredicted RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 ANLNQ9NQW6 1124 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 PCOLCE2Q9UKZ9 415 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 VANGL2Q9ULK5 521 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 PTPRBP23467 1997 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 PKD1L2Q7Z442 2459 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 BAHCC1Q9P281 2608 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 A0A1B0GVM2 712 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 A0A1B0GVT2 93 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 TCAF2A6NFQ2 919 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 FLRT2O43155 660 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 NRDCO43847 1150 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 PRPSAP2O60256 369 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 CBFA2T3O75081 653 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 NDUFA10O95299 355 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 SEMA4FO95754 770 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 DLDP09622 509 aaKnown RBP10.4□□□□□ -0.74
VPS28-204ENST00000526054 POLR2EP19388 210 aaKnown RBP10.4□□□□□ -0.74
VPS28-204ENST00000526054 CD70P32970 193 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 CSNK1EP49674 416 aaKnown RBP10.4□□□□□ -0.74
VPS28-204ENST00000526054 OXCT1P55809 520 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 BNC1Q01954 994 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 NRG1Q02297 640 aaPredicted RBP10.4□□□□□ -0.74
VPS28-204ENST00000526054 ZBTB16Q05516 673 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 TEAD4Q15561 434 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 HLA-BQ31612 363 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 RAB6CQ53S08 254 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 ZNF776Q68DI1 518 aaPredicted RBP10.4□□□□□ -0.74
VPS28-204ENST00000526054 GLRX5Q86SX6 157 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 CFAP52Q8N1V2 620 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 TXLNBQ8N3L3 684 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 CARNMT1Q8N4J0 409 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 CCDC185Q8N715 623 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 NIPA2Q8N8Q9 360 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 WFDC5Q8TCV5 224 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 RFFLQ8WZ73 363 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 TRIM7Q9C029 511 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 BTBD1Q9H0C5 482 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 RAB6CQ9H0N0 254 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 OSBPL2Q9H1P3 480 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 PRSS16Q9NQE7 514 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 TMPRSS4Q9NRS4 437 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 EPN1Q9Y6I3 576 aaPredicted RBP10.4□□□□□ -0.74
VPS28-204ENST00000526054 SLCO1B1Q9Y6L6 691 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 LAMA5O15230 3695 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 KNL1Q8NG31 2342 aa10.4□□□□□ -0.74
VPS28-204ENST00000526054 PLXNA2O75051 1894 aa10.4□□□□□ -0.75
VPS28-204ENST00000526054 CELSR3Q9NYQ7 3312 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 DSPP15924 2871 aaKnown RBP10.39□□□□□ -0.75
VPS28-204ENST00000526054 E9PAM4 449 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 I6L893 689 aaPredicted RBP10.39□□□□□ -0.75
VPS28-204ENST00000526054 LRCH4O75427 683 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 CLDN11O75508 207 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 FSBPO95073 299 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 MOCS3O95396 460 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 MIPP30301 263 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 PCK1P35558 622 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 GRIA4P48058 902 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 CDH4P55283 916 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 ST8SIA6P61647 398 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 RPS14P62263 151 aaKnown RBP10.39□□□□□ -0.75
VPS28-204ENST00000526054 C5orf22Q49AR2 442 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 RAD9BQ6WBX8 426 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 KIAA0907Q7Z7F0 614 aaPredicted RBP10.39□□□□□ -0.75
VPS28-204ENST00000526054 C14orf80Q86SX3 495 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 PROSER1Q86XN7 944 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 CCAR2Q8N163 923 aaKnown RBP10.39□□□□□ -0.75
VPS28-204ENST00000526054 CCDC112Q8NEF3 446 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 C1orf216Q8TAB5 229 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 FIBINQ8TAL6 211 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 BAHD1Q8TBE0 780 aaPredicted RBP10.39□□□□□ -0.75
VPS28-204ENST00000526054 IGSF8Q969P0 613 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 BIRC7Q96CA5 298 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 MYEOVQ96EZ4 313 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 BTBD6Q96KE9 485 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms