RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 COX4I1P13073 169 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 PRKAR2AP13861 404 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 YWHAQP27348 245 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 WDR4P57081 412 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 ITGA7Q13683 1181 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 TBC1D25Q3MII6 688 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 GPR107Q5VW38 600 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 KATNAL2Q8IYT4 538 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 TDRD5Q8NAT2 981 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 APBA2Q99767 749 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 GPATCH1Q9BRR8 931 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 ELOVL4Q9GZR5 314 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 NXF3Q9H4D5 531 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 STN1Q9H668 368 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 GNEQ9Y223 722 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 C2orf71A6NGG8 1288 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 PPP3CCP48454 512 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 SEL1L3Q68CR1 1132 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 SNX32Q86XE0 403 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 UNC45BQ8IWX7 931 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 RNPEPQ9H4A4 650 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 SSU72Q9NP77 194 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 HEATR9A2RTY3 570 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 MFN2O95140 757 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 LYPLA2O95372 231 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 ECHS1P30084 290 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 OR1E1P30953 314 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 CLK2P49760 499 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 CYP4X1Q8N118 509 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 EFCAB3Q8N7B9 438 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 PIWIL2Q8TC59 973 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 FBXO44Q9H4M3 255 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 PCDHGB4Q9UN71 923 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 ST3GAL5Q9UNP4 418 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 CARD8Q9Y2G2 431 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 CCNA2P20248 432 aa13.33□□□□□ -0.27
TCOF1-213ENST00000514442 CLK1P49759 484 aaKnown RBP13.33□□□□□ -0.27
TCOF1-213ENST00000514442 ZNF846Q147U1 533 aa13.33□□□□□ -0.27
TCOF1-213ENST00000514442 MARC1Q5VT66 337 aa13.33□□□□□ -0.27
TCOF1-213ENST00000514442 CHADLQ6NUI6 762 aa13.33□□□□□ -0.27
TCOF1-213ENST00000514442 RNF148Q8N7C7 305 aa13.33□□□□□ -0.27
TCOF1-213ENST00000514442 COL1A1P02452 1464 aaPredicted RBP13.33□□□□□ -0.28
TCOF1-213ENST00000514442 POU4F1Q01851 419 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 SP3Q02447 781 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 ILDR2Q71H61 639 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 ZSCAN18Q8TBC5 510 aaPredicted RBP13.33□□□□□ -0.28
TCOF1-213ENST00000514442 HELQQ8TDG4 1101 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 NID2Q14112 1375 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 SIGLEC16A6NMB1 481 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 CLDN5O00501 218 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 RAMP2O60895 175 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 PABPC4LP0CB38 370 aaKnown RBP13.33□□□□□ -0.28
TCOF1-213ENST00000514442 CCL23P55773 120 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 TRIM25Q14258 630 aaKnown RBP13.33□□□□□ -0.28
TCOF1-213ENST00000514442 N4BP2L1Q5TBK1 243 aaPredicted RBP13.33□□□□□ -0.28
TCOF1-213ENST00000514442 TTC7BQ86TV6 843 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 MFSD14AQ96MC6 490 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 KREMEN1Q96MU8 473 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 PHF12Q96QT6 1004 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 CIPCQ9C0C6 399 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 CDH22Q9UJ99 828 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 PCDHB12Q9Y5F1 795 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 GLTPD2A6NH11 291 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 CRABP2P29373 138 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 NOMO3P69849 1222 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 MRPL28Q13084 256 aaKnown RBP13.33□□□□□ -0.28
TCOF1-213ENST00000514442 CSHL1Q14406 222 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 C6orf52Q5T4I8 152 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 AGAP9Q5VTM2 703 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 OR52E8Q6IFG1 317 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 ZNF467Q7Z7K2 595 aaPredicted RBP13.33□□□□□ -0.28
TCOF1-213ENST00000514442 TDRPQ86YL5 185 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 C12orf50Q8NA57 414 aaPredicted RBP13.33□□□□□ -0.28
TCOF1-213ENST00000514442 LPCAT1Q8NF37 534 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 GOLGA2P5Q9HBQ8 144 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 PLIN4Q96Q06 1357 aa13.33□□□□□ -0.28
TCOF1-213ENST00000514442 APOC4-APOC2K7ER74 178 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 ALOX15BO15296 676 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 TIMM44O43615 452 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 ZBTB11O95625 1053 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-213ENST00000514442 APOC2P02655 101 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 PKNOX1P55347 436 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 TUBA4AP68366 448 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 MMRN1Q13201 1228 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 TBCELQ5QJ74 424 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 PIGZQ86VD9 579 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 PDSS2Q86YH6 399 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 NMRK2Q9NPI5 230 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 WWOXQ9NZC7 414 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 RNF112Q9ULX5 631 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 NFKBIEO00221 500 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 FGFR3P22607 806 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 SLC5A3P53794 718 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 INHBEP58166 350 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 DGUOKQ16854 277 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 AASDHQ4L235 1098 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-213ENST00000514442 TMEM53Q6P2H8 277 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 LGI2Q8N0V4 545 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 NETO2Q8NC67 525 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms