RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 RTKNQ9BST9 563 aa9.82□□□□□ -0.84
VCAN-210ENST00000513960 EFCAB1Q9HAE3 211 aa9.82□□□□□ -0.84
VCAN-210ENST00000513960 COPG2Q9UBF2 871 aa9.82□□□□□ -0.84
VCAN-210ENST00000513960 CDYLQ9Y232 598 aa9.82□□□□□ -0.84
VCAN-210ENST00000513960 COQ6Q9Y2Z9 468 aa9.82□□□□□ -0.84
VCAN-210ENST00000513960 AP4S1Q9Y587 144 aa9.82□□□□□ -0.84
VCAN-210ENST00000513960 PSAT1Q9Y617 370 aa9.82□□□□□ -0.84
VCAN-210ENST00000513960 EVPLQ92817 2033 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 FAM149AA5PLN7 773 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 TRDMT1O14717 391 aaKnown RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 SNNO75324 88 aaPredicted RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 VAPBO95292 243 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 CCDC130P13994 396 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 TSHRP16473 764 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 CSE1LP55060 971 aaKnown RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 MS4A2Q01362 244 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 NME3Q13232 169 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 AMHR2Q16671 573 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 DGKDQ16760 1214 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 CCDC14Q49A88 953 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 GLRA4Q5JXX5 417 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 ACOT1Q86TX2 421 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 CDKL3Q8IVW4 592 aaPredicted RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 UPF3AQ9H1J1 476 aaKnown RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 KCNH4Q9UQ05 1017 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 H3BRB1 525 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 PCLAFQ15004 111 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 TRIM16LQ309B1 348 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 PERM1Q5SV97 790 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 FAM91A1Q658Y4 838 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 ZFP1Q6P2D0 407 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 GK5Q6ZS86 529 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 STRA8Q7Z7C7 330 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 CAND1Q86VP6 1230 aaKnown RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 NT5DC4Q86YG4 428 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 SPATA6LQ8N4H0 392 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 MCUQ8NE86 351 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 MAPK15Q8TD08 544 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 CDH19Q9H159 772 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 TUT1Q9H6E5 874 aaKnown RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 CEPT1Q9Y6K0 416 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 BRCA1P38398 1863 aaKnown RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 RNASEH2AO75792 299 aaKnown RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 CLIC3O95833 236 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 NR4A1P22736 598 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 CASP2P42575 452 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 NAGLUP54802 743 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 INCA1Q0VD86 236 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 BNIP3Q12983 259 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 PITRM1Q5JRX3 1037 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 MAVSQ7Z434 540 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 IFNLR1Q8IU57 520 aaPredicted RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 ERI1Q8IV48 349 aaKnown RBP9.81□□□□□ -0.84
VCAN-210ENST00000513960 OR6B3Q8NGW1 331 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 CDCA5Q96FF9 252 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 CNDP1Q96KN2 507 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 RNF181Q9P0P0 153 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 CDC14AQ9UNH5 594 aa9.81□□□□□ -0.84
VCAN-210ENST00000513960 A0A096LPK6 155 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 A0A1W2PPW3 197 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 RGSL1A5PLK6 1076 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 CYP2C8P10632 490 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 GBE1Q04446 702 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 IFRD2Q12894 506 aaPredicted RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 NR1D2Q14995 579 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 NANOGNBQ7Z5D8 188 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 LILRA2Q8N149 483 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 CASP10Q92851 521 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 POLR1BQ9H9Y6 1135 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 CCDC167Q9P0B6 97 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 TRIM17Q9Y577 477 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 TMX2-CTNND1H3BSU7 103 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 PHGDHO43175 533 aaKnown RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 DENRO43583 198 aaKnown RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 TSPAN1O60635 241 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 RXRGP48443 463 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 NDST2P52849 883 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 CEACAM7Q14002 265 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 LSM12Q3MHD2 195 aaKnown RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 PPP1R26Q5T8A7 1209 aaPredicted RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 MFSD4BQ5TF39 518 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 EGFLAMQ63HQ2 1017 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 KCNT2Q6UVM3 1135 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 CROCCP3Q8IVE0 287 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 SCUBE3Q8IX30 993 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 OFCC1Q8IZS5 231 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 SHCBP1Q8NEM2 672 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 GPRC5AQ8NFJ5 357 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 FAM149B1Q96BN6 582 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 PIWIL1Q96J94 861 aaKnown RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 COX4I2Q96KJ9 171 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 FRMD8Q9BZ67 464 aaPredicted RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 FAM124BQ9H5Z6 455 aaPredicted RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 VTA1Q9NP79 307 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 DNAJC28Q9NX36 388 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 PCDHA11Q9Y5I1 949 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 WDR90Q96KV7 1748 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 H6PDO95479 791 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 ATP5BP06576 529 aaKnown RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 TGM2P21980 687 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms