RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 NIPA1Q7RTP0 329 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 TLK2Q86UE8 772 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 DSELQ8IZU8 1212 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CENPLQ8N0S6 344 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 EBNA1BP2Q99848 306 aaKnown RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 DNAJC28Q9NX36 388 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 KIAA1257Q9ULG3 409 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ADGRA2Q96PE1 1338 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 CENPXA8MT69 81 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 TRAFD1O14545 582 aaPredicted RBP11.41□□□□□ -0.58
TCOF1-211ENST00000513346 SNPHO15079 494 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 MYL6P60660 151 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 ST8SIA6P61647 398 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 CSHL1Q14406 222 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 MTX3Q5HYI7 312 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 SCARA3Q6AZY7 606 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 DLK2Q6UY11 383 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 ATG14Q6ZNE5 492 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 CPB2Q96IY4 423 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 OLFM1Q99784 485 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 APOL4Q9BPW4 351 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 TRIM54Q9BYV2 358 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 NOL11Q9H8H0 719 aaKnown RBP11.41□□□□□ -0.58
TCOF1-211ENST00000513346 TRIM39Q9HCM9 518 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 STARD7Q9NQZ5 370 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 TTLL13PA6NNM8 815 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 H3BSA7 217 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 AREL1O15033 823 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 ACADVLP49748 655 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 VGLL4Q14135 290 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 NFIL3Q16649 462 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 ATP6AP1LQ52LC2 224 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 C10orf120Q5SQS8 335 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 NKD2Q969F2 451 aaPredicted RBP11.41□□□□□ -0.58
TCOF1-211ENST00000513346 MARK4Q96L34 752 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 PANX3Q96QZ0 392 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 CATSPERBQ9H7T0 1116 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 SIX2Q9NPC8 291 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 IMPAD1Q9NX62 359 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 AP4E1Q9UPM8 1137 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 TELO2Q9Y4R8 837 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 FADS3Q9Y5Q0 445 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 AVILO75366 819 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 PAN2Q504Q3 1202 aaKnown RBP11.41□□□□□ -0.58
TCOF1-211ENST00000513346 HERC6Q8IVU3 1022 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 SNX31Q8N9S9 440 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 SMYD1Q8NB12 490 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 NKX2-3Q8TAU0 364 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 HTR3CQ8WXA8 447 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 RSPH1Q8WYR4 309 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 PIF1Q9H611 641 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 VTA1Q9NP79 307 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 HPS4Q9NQG7 708 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 DDIT4Q9NX09 232 aa11.41□□□□□ -0.58
TCOF1-211ENST00000513346 EVPLLA8MZ36 301 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 FAM20BO75063 409 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 ANXA9O76027 345 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 THP07101 528 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 IRF1P10914 325 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 ATN1P54259 1190 aaPredicted RBP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 NOMO3P69849 1222 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 CES3Q6UWW8 571 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 KCNMB4Q86W47 210 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 TAGAPQ8N103 731 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 REPS2Q8NFH8 660 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 SLC7A6OSQ96CW6 309 aaPredicted RBP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 MUC3BQ9H195 1237 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 TSR3Q9UJK0 312 aaKnown RBP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 ADAM28Q9UKQ2 775 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 MYH8P13535 1937 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 DHRS12A0PJE2 317 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 HNRNPCL2B2RXH8 293 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 CYB561D2O14569 222 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 ADRB2P07550 413 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 RPL7AP62424 266 aaKnown RBP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 TNK2Q07912 1038 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 SQLEQ14534 574 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 PRKD1Q15139 912 aaPredicted RBP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 ZIK1Q3SY52 487 aaPredicted RBP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 PGAM4Q8N0Y7 254 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 EID3Q8N140 333 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 ZNF384Q8TF68 577 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 CPT1BQ92523 772 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 SEMA4DQ92854 862 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 PHF12Q96QT6 1004 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 WDR18Q9BV38 432 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 AFF4Q9UHB7 1163 aaKnown RBP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 PHF24Q9UPV7 400 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 TSC22D2O75157 780 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 PSMD10O75832 226 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 TSPAN9O75954 239 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 NADKO95544 446 aaPredicted RBP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 SPATA31C1P0DKV0 1188 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 AKR1A1P14550 325 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 NR2C2P49116 596 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 HARS2P49590 506 aaKnown RBP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 PLIN5Q00G26 463 aa11.4□□□□□ -0.58
TCOF1-211ENST00000513346 MSLNQ13421 630 aaPredicted RBP11.4□□□□□ -0.58
TCOF1-211ENST00000513346 GRIK4Q16099 956 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms