RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 GOLGA8SH3BPF8 625 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 KPNA3O00505 521 aaPredicted RBP11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 PES1O00541 588 aaKnown RBP11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 MAGEC1O60732 1142 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 RNGTTO60942 597 aaKnown RBP11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 F9P00740 461 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 RRM1P23921 792 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 CHRNA3P32297 505 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 FLT3P36888 993 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 GABRB2P47870 512 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 RXRGP48443 463 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 COL9A2Q14055 689 aaPredicted RBP11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 STAT4Q14765 748 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 SLC25A52Q3SY17 297 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 SETMARQ53H47 684 aaPredicted RBP11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 C2CD6Q53TS8 623 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 PIP5KL1Q5T9C9 394 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 KLHDC7AQ5VTJ3 777 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 SFMBT2Q5VUG0 894 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 TRNP1Q6NT89 227 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 C22orf39Q6P5X5 142 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 LRRC31Q6UY01 552 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 LINGO4Q6UY18 593 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 KANSL1Q7Z3B3 1105 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 SETD3Q86TU7 594 aaPredicted RBP11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 NOP9Q86U38 636 aaKnown RBP11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 PDZD3Q86UT5 571 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 IQCHQ86VS3 1027 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 TMPRSS12Q86WS5 348 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 ERICH1Q86X53 443 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 PDCD7Q8N8D1 485 aaKnown RBP11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 OR2A12Q8NGT7 310 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 HNRNPLLQ8WVV9 542 aaKnown RBP11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 KLK6Q92876 244 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 ARRDC3Q96B67 414 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 CCDC114Q96M63 670 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 FARP1Q9Y4F1 1045 aaPredicted RBP11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 PAXBP1Q9Y5B6 917 aa11.82□□□□□ -0.52
HMGCS1-204ENST00000507293 IGLV3-10A0A075B6K4 115 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 A0A0D9SEW6 157 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 A0A1W2PQU0 124 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 DRGXA6NNA5 263 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 E9PAM4 449 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 RNF103O00237 685 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 SLC31A1O15431 190 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 SMAD6O43541 496 aaKnown RBP11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 SDC3O75056 442 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 PRLRP16471 622 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 GLDCP23378 1020 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 ERCC5P28715 1186 aaPredicted RBP11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 OR1E1P30953 314 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 CLCN6P51797 869 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 NOMO3P69849 1222 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 OVGP1Q12889 678 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 C6orf118Q5T5N4 469 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 NAA35Q5VZE5 725 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 CHST14Q8NCH0 376 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 OR7D4Q8NG98 312 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 GRIN3AQ8TCU5 1115 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 TSC1Q92574 1164 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 KLHDC7BQ96G42 594 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 C1orf74Q96LT6 269 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 CFAP57Q96MR6 1250 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 NAA15Q9BXJ9 866 aaKnown RBP11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 TNKS2Q9H2K2 1166 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 DYRK4Q9NR20 520 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 DACH1Q9UI36 760 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 TRPM6Q9BX84 2022 aa11.81□□□□□ -0.52
HMGCS1-204ENST00000507293 F8VZ95 297 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 SRGAP2O75044 1071 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 ENDOD1O94919 500 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 LSM8O95777 96 aaKnown RBP11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 PRNPP04156 253 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 MMEP08473 750 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 C1SP09871 688 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 THEGLP0DJG4 465 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 CDK4P11802 303 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 JUPP14923 745 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 UCHL3P15374 230 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 HNF1BP35680 557 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 RECQLP46063 649 aaPredicted RBP11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 ZNF284Q2VY69 593 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 ARSIQ5FYB1 569 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 ARTNQ5T4W7 220 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 HES3Q5TGS1 186 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 FBXL19Q6PCT2 694 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 BNIPLQ7Z465 357 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 HORMAD1Q86X24 394 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 FAM131BQ86XD5 332 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 TMEM145Q8NBT3 493 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 MSANTD4Q8NCY6 345 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 TMIEQ8NEW7 156 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 EPS8L1Q8TE68 723 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 CPA5Q8WXQ8 436 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 NXPE2Q96DL1 559 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 SPON2Q9BUD6 331 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 NUP62CLQ9H1M0 184 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 ATP13A1Q9HD20 1204 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 FZD3Q9NPG1 666 aa11.8□□□□□ -0.52
HMGCS1-204ENST00000507293 SCUBE2Q9NQ36 999 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms