RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	RANBP9	Q96S59	729 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	AGAP2	Q99490	1192 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	NMRAL1	Q9HBL8	299 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TRIM39	Q9HCM9	518 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TUBA8	Q9NY65	449 aa	Predicted RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CROT	Q9UKG9	612 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PNMA8B	Q9ULN7	279 aa	Predicted RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	GIT1	Q9Y2X7	761 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	NR5A2	O00482	541 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	EI24	O14681	340 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PFDN6	O15212	129 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	MYL4	P12829	197 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ACO1	P21399	889 aa	Known RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	LRPAP1	P30533	357 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CRK	P46108	304 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	FPGS	Q05932	587 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SPP2	Q13103	211 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	FASTK	Q14296	549 aa	Known RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CAPRIN1	Q14444	709 aa	Known RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ZNF460	Q14592	562 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PIGG	Q5H8A4	983 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	FAM47C	Q5HY64	1035 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	LYSMD3	Q7Z3D4	306 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ARHGEF1	Q92888	912 aa	Known RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	MFSD14A	Q96MC6	490 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SMARCAD1	Q9H4L7	1026 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	GIMAP4	Q9NUV9	329 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	NYAP2	Q9P242	653 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	RUVBL2	Q9Y230	463 aa	Known RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	GLI3	P10071	1580 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	DOCK2	Q92608	1830 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	COL5A2	P05997	1499 aa	Predicted RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ZNF541	Q9H0D2	1346 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	C10orf71	Q711Q0	1435 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	NOTO	A8MTQ0	251 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	EIF3F	O00303	357 aa	Predicted RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TRDMT1	O14717	391 aa	Known RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	NRP2	O60462	931 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CYP2C9	P11712	490 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	RPL14	P50914	215 aa	Known RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PRKCQ	Q04759	706 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	NOMO1	Q15155	1222 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ARHGEF16	Q5VV41	709 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SNRNP48	Q6IEG0	339 aa	Known RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	BNIPL	Q7Z465	357 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	DSG4	Q86SJ6	1040 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CCDC103	Q8IW40	242 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	FAM149B1	Q96BN6	582 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	DACH2	Q96NX9	599 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	LGMN	Q99538	433 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	RNF38	Q9H0F5	515 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CNGB3	Q9NQW8	809 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	OAZ3	Q9UMX2	235 aa		10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ASTN2	O75129	1339 aa	Predicted RBP	10.79	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	NEMP2	A6NFY4	417 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	AQP9	O43315	295 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	BCAS2	O75934	225 aa	Predicted RBP	10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ALB	P02768	609 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	OPRL1	P41146	370 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	GRM5	P41594	1212 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	STX1B	P61266	288 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SLC13A2	Q13183	592 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TRIM25	Q14258	630 aa	Known RBP	10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CA9	Q16790	459 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TKFC	Q3LXA3	575 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CCDC14	Q49A88	953 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ARFGAP1	Q8N6T3	406 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CHURC1	Q8WUH1	139 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CRYGN	Q8WXF5	182 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PHF21B	Q96EK2	531 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	NLRP4	Q96MN2	994 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TAAR1	Q96RJ0	339 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	IARS2	Q9NSE4	1012 aa	Known RBP	10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	EXD2	Q9NVH0	621 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	KLHL8	Q9P2G9	620 aa	Predicted RBP	10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ZDHHC2	Q9UIJ5	367 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SPO11	Q9Y5K1	396 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PAPSS1	O43252	624 aa	Predicted RBP	10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	XYLB	O75191	536 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	GABBR2	O75899	941 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	C2	P06681	752 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ELK4	P28324	431 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PRDX6	P30041	224 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	IFRD2	Q12894	506 aa	Predicted RBP	10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PLD5	Q8N7P1	536 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TMEM102	Q8N9M5	508 aa	Predicted RBP	10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CALML6	Q8TD86	181 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	KCTD4	Q8WVF5	259 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	HDAC11	Q96DB2	347 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ANKRD36BP1	Q96IX9	119 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	RMDN3	Q96TC7	470 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TCF12	Q99081	682 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	C1orf50	Q9BV19	199 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ACE2	Q9BYF1	805 aa	Predicted RBP	10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SYBU	Q9NX95	663 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SUN2	Q9UH99	717 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ITGB1BP2	Q9UKP3	347 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PCDHB12	Q9Y5F1	795 aa		10.78	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	COPG1	Q9Y678	874 aa	Known RBP	10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms