RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 DTNAQ9Y4J8 743 aa4.18□□□□□ -1.74
VPS50-219ENST00000495039 IGLV5-37A0A075B6J1 123 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 ANO9A1A5B4 782 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 FAM234BA2RU67 622 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 APOL1O14791 398 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 KPNA5O15131 536 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 ITM2AO43736 263 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 PLIN1O60240 522 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 TMCC1O94876 653 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 PEPDP12955 493 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 ARL16Q0P5N6 197 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 SMIM29Q86T20 159 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 CTCFLQ8NI51 663 aaPredicted RBP4.17□□□□□ -1.74
VPS50-219ENST00000495039 FAM110DQ8TAY7 271 aaPredicted RBP4.17□□□□□ -1.74
VPS50-219ENST00000495039 SPATA20Q8TB22 786 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 GDF15Q99988 308 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 TMEM120AQ9BXJ8 343 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 MALT1Q9UDY8 824 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 TRPC5Q9UL62 973 aaPredicted RBP4.17□□□□□ -1.74
VPS50-219ENST00000495039 PKP3Q9Y446 797 aa4.17□□□□□ -1.74
VPS50-219ENST00000495039 COPG1Q9Y678 874 aaKnown RBP4.17□□□□□ -1.74
VPS50-219ENST00000495039 A0A1B0GVY2 172 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 TCRBV7S3A2A0A539 114 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 PMM2O15305 246 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 GLP2RO95838 553 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 PICALMQ13492 652 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 FAM171A1Q5VUB5 890 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 IL31Q6EBC2 164 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 SLC30A9Q6PML9 568 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 C9orf139Q6ZV77 190 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 TMEM200AQ86VY9 491 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 NEXN-AS1Q8NBZ9 246 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 DBF4BQ8NFT6 615 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 BICD1Q96G01 975 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 TXNDC15Q96J42 360 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 NFU1Q9UMS0 254 aa4.16□□□□□ -1.74
VPS50-219ENST00000495039 TBC1D3DA0A087WVF3 549 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBC1D3IA0A087WXS9 549 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBC1D3EA0A087X179 549 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBC1D3KA0A087X1G2 549 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 CCDC194A0A1B0GVG4 234 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.15□□□□□ -1.75
VPS50-219ENST00000495039 MAGEA13PA6NCF6 341 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBC1D3BA6NDS4 549 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBC1D3FA6NER0 549 aaPredicted RBP4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBC1D3LB9A6J9 549 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 NTSR2O95665 410 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBC1D3HP0C7X1 549 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 SLC5A1P13866 664 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 ENO3P13929 434 aaPredicted RBP4.15□□□□□ -1.75
VPS50-219ENST00000495039 STT3AP46977 705 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 PEX5P50542 639 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 CASP5P51878 434 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 KRTAP10-3P60369 221 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 RBM6P78332 1123 aaKnown RBP4.15□□□□□ -1.75
VPS50-219ENST00000495039 IFIT5Q13325 482 aaKnown RBP4.15□□□□□ -1.75
VPS50-219ENST00000495039 HDAC1Q13547 482 aaPredicted RBP4.15□□□□□ -1.75
VPS50-219ENST00000495039 PKP1Q13835 747 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 GRM4Q14833 912 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBC1D3GQ6DHY5 549 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBC1D3CQ6IPX1 549 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 FBXO38Q6PIJ6 1188 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBC1D3Q8IZP1 549 aaPredicted RBP4.15□□□□□ -1.75
VPS50-219ENST00000495039 TXLNBQ8N3L3 684 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 WDR60Q8WVS4 1066 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 TBCBQ99426 244 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 NAA15Q9BXJ9 866 aaKnown RBP4.15□□□□□ -1.75
VPS50-219ENST00000495039 CCDC134Q9H6E4 229 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 EPS8L2Q9H6S3 715 aa4.15□□□□□ -1.75
VPS50-219ENST00000495039 SNED1Q8TER0 1413 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 PRAC2D3DTV9 90 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 EYA2O00167 538 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 PCDH17O14917 1159 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 CLGNO14967 610 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 MYL3P08590 195 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 NEK3P51956 506 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 MYBPHQ13203 477 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 ARL13BQ3SXY8 428 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 C5orf22Q49AR2 442 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 PLEKHO1Q53GL0 409 aaPredicted RBP4.14□□□□□ -1.75
VPS50-219ENST00000495039 ANKRD44Q8N8A2 993 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 MMP28Q9H239 520 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 SLC52A1Q9NWF4 448 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 CNTN6Q9UQ52 1028 aa4.14□□□□□ -1.75
VPS50-219ENST00000495039 C17orf102A2RUQ5 167 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 TULP2O00295 520 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 HSPB6O14558 160 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 ANXA6P08133 673 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 MMP3P08254 477 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 HOXB9P17482 250 aaPredicted RBP4.13□□□□□ -1.75
VPS50-219ENST00000495039 DGKAP23743 735 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 PRIM2P49643 509 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 OAZ1P54368 228 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 AK2P54819 239 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 FAM3BP58499 235 aaPredicted RBP4.13□□□□□ -1.75
VPS50-219ENST00000495039 ERVK11-1P61568 191 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 DMP1Q13316 513 aaPredicted RBP4.13□□□□□ -1.75
VPS50-219ENST00000495039 ARL6IP4Q66PJ3 421 aaKnown RBP4.13□□□□□ -1.75
VPS50-219ENST00000495039 PLEKHA7Q6IQ23 1121 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 ZDHHC23Q8IYP9 409 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms