RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 MT-CO1P00395 513 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 GZMAP12544 262 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 CEACAM1P13688 526 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 GLDCP23378 1020 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 RECQLP46063 649 aaPredicted RBP15.43■□□□□ 0.06
USP39-217ENST00000491659 GRIA4P48058 902 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 SERPINH1P50454 418 aaKnown RBP15.43■□□□□ 0.06
USP39-217ENST00000491659 ARTNQ5T4W7 220 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 FAM72AQ5TYM5 149 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 FAM72DQ6L9T8 149 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 TMC6Q7Z403 805 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 ADAT2Q7Z6V5 191 aaKnown RBP15.43■□□□□ 0.06
USP39-217ENST00000491659 NLRP14Q86W24 1093 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 FAM72BQ86X60 149 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 DEFB124Q8NES8 71 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 C1orf216Q8TAB5 229 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 PIP4K2CQ8TBX8 421 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 TRIM11Q96F44 468 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 EPAS1Q99814 870 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 TM9SF3Q9HD45 589 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 OSGEPQ9NPF4 335 aa15.43■□□□□ 0.06
USP39-217ENST00000491659 TPX2Q9ULW0 747 aaKnown RBP15.43■□□□□ 0.06
USP39-217ENST00000491659 A0A1B0GVT2 93 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 UPK3BL1B0FP48 263 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 UPK3BL2E5RIL1 263 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 K7ERQ8 282 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 RAMP2O60895 175 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 RTN2O75298 545 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 IGHV4-34P06331 123 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 TPM3P06753 285 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 SKILP12757 684 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 PSMA2P25787 234 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 L1CAMP32004 1257 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 DRD3P35462 400 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 PBX1P40424 430 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 GEMIN4P57678 1058 aaKnown RBP15.42■□□□□ 0.06
USP39-217ENST00000491659 SLC20A2Q08357 652 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 ZNF252P-AS1Q0IIN9 211 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 SEMA3BQ13214 749 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 MAMLD1Q13495 774 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 POM121L1PQ3SYA9 428 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 N4BP2L1Q5TBK1 243 aaPredicted RBP15.42■□□□□ 0.06
USP39-217ENST00000491659 PLEKHA7Q6IQ23 1121 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.42■□□□□ 0.06
USP39-217ENST00000491659 VPS36Q86VN1 386 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 ZNF653Q96CK0 615 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 CEP44Q9C0F1 390 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 MAGEH1Q9H213 219 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 DYRK4Q9NR20 520 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 IFNKQ9P0W0 207 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 CNOT8Q9UFF9 292 aaKnown RBP15.42■□□□□ 0.06
USP39-217ENST00000491659 DNAI1Q9UI46 699 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 SARDHQ9UL12 918 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 PPM1HQ9ULR3 514 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 FZD10Q9ULW2 581 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 HPCAL4Q9UM19 191 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 NEU3Q9UQ49 428 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 BZW2Q9Y6E2 419 aaKnown RBP15.42■□□□□ 0.06
USP39-217ENST00000491659 SCINQ9Y6U3 715 aa15.42■□□□□ 0.06
USP39-217ENST00000491659 NCOR2Q9Y618 2525 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 TBC1D3DA0A087WVF3 549 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 TBC1D3IA0A087WXS9 549 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 TBC1D3EA0A087X179 549 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 TBC1D3KA0A087X1G2 549 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 CXorf51AA0A1B0GTR3 108 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 A0A1W2PPC4 97 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 TBC1D3FA6NER0 549 aaPredicted RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 TBC1D3LB9A6J9 549 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 PLK4O00444 970 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 KPNA3O00505 521 aaPredicted RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 DDX3XO00571 662 aaKnown RBP eCLIP15.41■□□□□ 0.069e-13■■■■□ 21.9
USP39-217ENST00000491659 GIPC1O14908 333 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 SMAD6O43541 496 aaKnown RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 CREB3O43889 395 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 ZMPSTE24O75844 475 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 FTLP02792 175 aaPredicted RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 PRNPP04156 253 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 TBC1D3HP0C7X1 549 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 MYBL1P10243 752 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 EPHB2P29323 1055 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 CHRNA3P32297 505 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 ACVRL1P37023 503 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 CSNK1EP49674 416 aaKnown RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 CCR5P51681 352 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 METAP1P53582 386 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 RACK1P63244 317 aaKnown RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 ARF5P84085 180 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 OGDHQ02218 1023 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 CCDC15Q0P6D6 951 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 CNTN1Q12860 1018 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 SLC14A1Q13336 389 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 TBC1D3GQ6DHY5 549 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 TBC1D3CQ6IPX1 549 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 ZNF354CQ86Y25 554 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 TBC1D3Q8IZP1 549 aaPredicted RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 PYROXD2Q8N2H3 581 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 PCDH20Q8N6Y1 951 aaKnown RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 OR2A12Q8NGT7 310 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 SYN2Q92777 582 aaPredicted RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 FAM131CQ96AQ9 280 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms