RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 KLC2Q9H0B6 622 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 PCED1AQ9H1Q7 454 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 HSD3B7Q9H2F3 369 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 WDCPQ9H6R7 721 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 NLRC4Q9NPP4 1024 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 AASDHPPTQ9NRN7 309 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 FANCLQ9NW38 375 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 UCKL1Q9NWZ5 548 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 VPS51Q9UID3 782 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 VPS28Q9UK41 221 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 ZFR2Q9UPR6 939 aaKnown RBP8.29□□□□□ -1.08
USP48-207ENST00000471752 NCKAP1Q9Y2A7 1128 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 RAXQ9Y2V3 346 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 ATMQ13315 3056 aa8.29□□□□□ -1.08
USP48-207ENST00000471752 PLXNA2O75051 1894 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 TMEM131Q92545 1883 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 A0A1B0GVM2 712 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 TRABD2BA6NFA1 517 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 TCAF2A6NFQ2 919 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 LRRC72A6NJI9 287 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 E9PAM4 449 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 F8VZ95 297 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 TLR4O00206 839 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 TRIM38O00635 465 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 MCF2LO15068 1137 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 SLC31A1O15431 190 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 LATO43561 262 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 RNASEH1O60930 286 aaKnown RBP8.28□□□□□ -1.08
USP48-207ENST00000471752 MOCS3O95396 460 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 CER1O95813 267 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 C5AR1P21730 350 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 ERCC5P28715 1186 aaPredicted RBP8.28□□□□□ -1.08
USP48-207ENST00000471752 CD38P28907 300 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 CCR5P51681 352 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 CDH4P55283 916 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 CLDN2P57739 230 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 NXPH1P58417 271 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 POLR2FP61218 127 aaKnown RBP8.28□□□□□ -1.08
USP48-207ENST00000471752 NOMO3P69849 1222 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 DEUP1Q05D60 604 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 CYP4F3Q08477 520 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 FGL2Q14314 439 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 SLC25A52Q3SY17 297 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 CCDC14Q49A88 953 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 ZNF542PQ5EBM4 170 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 ARSIQ5FYB1 569 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 RABGAP1LQ5R372 815 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 CDKAL1Q5VV42 579 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 SEL1L3Q68CR1 1132 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 DPY19L3Q6ZPD9 716 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 SND1Q7KZF4 910 aaKnown RBP eCLIP8.28□□□□□ -1.08
USP48-207ENST00000471752 TMPRSS7Q7RTY8 843 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 ADAT2Q7Z6V5 191 aaKnown RBP8.28□□□□□ -1.08
USP48-207ENST00000471752 PROSER1Q86XN7 944 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 SLC25A45Q8N413 288 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 CCDC185Q8N715 623 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 EPS8L1Q8TE68 723 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 HNRNPLLQ8WVV9 542 aaKnown RBP8.28□□□□□ -1.08
USP48-207ENST00000471752 ELF4Q99607 663 aaPredicted RBP8.28□□□□□ -1.08
USP48-207ENST00000471752 SPON2Q9BUD6 331 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 STK33Q9BYT3 514 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 MUC3BQ9H195 1237 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 NUP62CLQ9H1M0 184 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 SYNCQ9H7C4 482 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 FAM207AQ9NSI2 230 aaPredicted RBP8.28□□□□□ -1.08
USP48-207ENST00000471752 SLC12A6Q9UHW9 1150 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 GGT7Q9UJ14 662 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 NEU3Q9UQ49 428 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 SIK3Q9Y2K2 1263 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 PCDHGB2Q9Y5G2 931 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 WASF2Q9Y6W5 498 aa8.28□□□□□ -1.08
USP48-207ENST00000471752 IGLV3-10A0A075B6K4 115 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 TYW5A2RUC4 315 aaKnown RBP8.27□□□□□ -1.09
USP48-207ENST00000471752 RAD51BO15315 384 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 SPINT1O43278 529 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 PLRG1O43660 514 aaKnown RBP8.27□□□□□ -1.09
USP48-207ENST00000471752 PCDHGA12O60330 932 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 RNGTTO60942 597 aaKnown RBP8.27□□□□□ -1.09
USP48-207ENST00000471752 CLDN11O75508 207 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 TRIM16O95361 564 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 ADH1BP00325 375 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 CYP1A1P04798 512 aaPredicted RBP8.27□□□□□ -1.09
USP48-207ENST00000471752 RHOCP08134 193 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 GIMD1P0DJR0 217 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 SLC2A3P11169 496 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 CHRNA3P32297 505 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 C21orf59P57076 290 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 JAM2P57087 298 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 ARF5P84085 180 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 ELAVL3Q14576 367 aaKnown RBP8.27□□□□□ -1.09
USP48-207ENST00000471752 TEAD4Q15561 434 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 CDO1Q16878 200 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 ZNF284Q2VY69 593 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 LRRC73Q5JTD7 316 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 IL27RAQ6UWB1 636 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 LRSAM1Q6UWE0 723 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 APTXQ7Z2E3 356 aaKnown RBP8.27□□□□□ -1.09
USP48-207ENST00000471752 CCDC117Q8IWD4 279 aaPredicted RBP8.27□□□□□ -1.09
USP48-207ENST00000471752 DRC7Q8IY82 874 aa8.27□□□□□ -1.09
USP48-207ENST00000471752 ATP11CQ8NB49 1132 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms