RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 RSRC1Q96IZ7 334 aaKnown RBP15.33■□□□□ 0.05
LDLR-202ENST00000455727 VPS39Q96JC1 886 aa15.33■□□□□ 0.05
LDLR-202ENST00000455727 GPR22Q99680 433 aa15.33■□□□□ 0.05
LDLR-202ENST00000455727 SLC39A8Q9C0K1 460 aa15.33■□□□□ 0.05
LDLR-202ENST00000455727 IARS2Q9NSE4 1012 aaKnown RBP15.33■□□□□ 0.05
LDLR-202ENST00000455727 SFMBT1Q9UHJ3 866 aa15.33■□□□□ 0.05
LDLR-202ENST00000455727 APOBEC2Q9Y235 224 aaKnown RBP15.33■□□□□ 0.05
LDLR-202ENST00000455727 NOD1Q9Y239 953 aa15.33■□□□□ 0.05
LDLR-202ENST00000455727 ANKRD6Q9Y2G4 727 aa15.33■□□□□ 0.05
LDLR-202ENST00000455727 PLXNA3P51805 1871 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 H2AFYO75367 372 aaKnown RBP15.33■□□□□ 0.04
LDLR-202ENST00000455727 CABYRO75952 493 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 KLHL2O95198 593 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 APOA4P06727 396 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 ENO1P06733 434 aaKnown RBP15.33■□□□□ 0.04
LDLR-202ENST00000455727 POLD2P49005 469 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 GEMP55040 296 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 DSC1Q08554 894 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 SMAD1Q15797 465 aaKnown RBP15.33■□□□□ 0.04
LDLR-202ENST00000455727 ANO4Q32M45 955 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 POTEHQ6S545 545 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 GLB1LQ6UWU2 654 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 ARHGAP36Q6ZRI8 547 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 CNTN4Q8IWV2 1026 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 SREK1Q8WXA9 508 aaKnown RBP15.33■□□□□ 0.04
LDLR-202ENST00000455727 FUBP3Q96I24 572 aaKnown RBP eCLIP15.33■□□□□ 0.04
LDLR-202ENST00000455727 SERPINB11Q96P15 392 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 ZCWPW1Q9H0M4 648 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 RHOJQ9H4E5 214 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 MRM3Q9HC36 420 aaKnown RBP15.33■□□□□ 0.04
LDLR-202ENST00000455727 TRMT13Q9NUP7 481 aaKnown RBP15.33■□□□□ 0.04
LDLR-202ENST00000455727 ZNF358Q9NW07 568 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 MID2Q9UJV3 735 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 PCDHB12Q9Y5F1 795 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 TTC3P53804 2025 aa15.33■□□□□ 0.04
LDLR-202ENST00000455727 NYNRINQ9P2P1 1898 aaKnown RBP15.33■□□□□ 0.04
LDLR-202ENST00000455727 TMEM114B3SHH9 223 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 SPECC1L-ADORA2AF8WAN1 911 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 G3V2L1 256 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 CCND3P30281 292 aaPredicted RBP15.32■□□□□ 0.04
LDLR-202ENST00000455727 ALDH18A1P54886 795 aaKnown RBP15.32■□□□□ 0.04
LDLR-202ENST00000455727 MLLT6P55198 1093 aaPredicted RBP15.32■□□□□ 0.04
LDLR-202ENST00000455727 PRKCZQ05513 592 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 ITGA9Q13797 1035 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 UGP2Q16851 508 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 RABGAP1LQ5R372 815 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 MON1AQ86VX9 555 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 ZC3HC1Q86WB0 502 aaKnown RBP15.32■□□□□ 0.04
LDLR-202ENST00000455727 DCP1BQ8IZD4 617 aaKnown RBP15.32■□□□□ 0.04
LDLR-202ENST00000455727 RTL3Q8N8U3 475 aaKnown RBP15.32■□□□□ 0.04
LDLR-202ENST00000455727 SPATA22Q8NHS9 363 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 TTC8Q8TAM2 541 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 USP33Q8TEY7 942 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 NMUR1Q9HB89 426 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 ENTPD7Q9NQZ7 604 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 SCML2Q9UQR0 700 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 CENPFP49454 3210 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 E9PAM4 449 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 F8W810 466 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 ZNF195O14628 629 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 IBSPP21815 317 aaPredicted RBP15.32■□□□□ 0.04
LDLR-202ENST00000455727 ADRA1AP35348 466 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 PGM1P36871 562 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 PGFP49763 221 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 TUBP50607 506 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 DNAL1Q4LDG9 190 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 KHDC1Q4VXA5 237 aaKnown RBP15.32■□□□□ 0.04
LDLR-202ENST00000455727 DENND5AQ6IQ26 1287 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 MSANTD2Q6P1R3 559 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 RDH11Q8TC12 318 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 FATE1Q969F0 183 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 ATXN7L3BQ96GX2 97 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 NMRAL1Q9HBL8 299 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 TLR6Q9Y2C9 796 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 LRRC42Q9Y546 428 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 CDY1Q9Y6F8 540 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 TLL2Q9Y6L7 1015 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 DOCK4Q8N1I0 1966 aa15.32■□□□□ 0.04
LDLR-202ENST00000455727 PRR5-ARHGAP8B1AHC4 643 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 MSI1O43347 362 aaKnown RBP15.31■□□□□ 0.04
LDLR-202ENST00000455727 MYCNP04198 464 aaPredicted RBP15.31■□□□□ 0.04
LDLR-202ENST00000455727 SLC2A3P11169 496 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 ARRB2P32121 409 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 GCKP35557 465 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 IDH3AP50213 366 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 ARHGAP8P85298 464 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 NFE2Q16621 373 aaPredicted RBP15.31■□□□□ 0.04
LDLR-202ENST00000455727 SLC39A12Q504Y0 691 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 ATG14Q6ZNE5 492 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 SLC24A5Q71RS6 500 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 RTN4RL1Q86UN2 441 aaPredicted RBP15.31■□□□□ 0.04
LDLR-202ENST00000455727 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.31■□□□□ 0.04
LDLR-202ENST00000455727 RBM15BQ8NDT2 890 aaKnown RBP15.31■□□□□ 0.04
LDLR-202ENST00000455727 ZNF419Q96HQ0 510 aaPredicted RBP15.31■□□□□ 0.04
LDLR-202ENST00000455727 C8orf48Q96LL4 319 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 FBXO44Q9H4M3 255 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 PNPOQ9NVS9 261 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 HS3ST4Q9Y661 456 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 A0A1W2PQH9 124 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 TRIM13O60858 407 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms