RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 TTC39BQ5VTQ0 682 aaPredicted RBP11.22□□□□□ -0.61
SCN9A-205ENST00000454569 PTCRAQ6ISU1 281 aaPredicted RBP11.22□□□□□ -0.61
SCN9A-205ENST00000454569 LINGO4Q6UY18 593 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 OTOP3Q7RTS5 596 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 SETD3Q86TU7 594 aaPredicted RBP11.22□□□□□ -0.61
SCN9A-205ENST00000454569 CCDC13Q8IYE1 715 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 ZNF567Q8N184 647 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 LZTR1Q8N653 840 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 FIBINQ8TAL6 211 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 HTR3CQ8WXA8 447 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 CASKIN2Q8WXE0 1202 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 SLCO2A1Q92959 643 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 OTUB2Q96DC9 234 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 NSMCE3Q96MG7 304 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 TSGA13Q96PP4 275 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 GORASP1Q9BQQ3 440 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 ACE2Q9BYF1 805 aaPredicted RBP11.22□□□□□ -0.61
SCN9A-205ENST00000454569 FRMD8P1Q9BZ68 369 aaPredicted RBP11.22□□□□□ -0.61
SCN9A-205ENST00000454569 DPH5Q9H2P9 285 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 PDFQ9HBH1 243 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 HOMER3Q9NSC5 361 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 ABCB8Q9NUT2 735 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 SEPT10Q9P0V9 454 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 FBXO10Q9UK96 956 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 SNX24Q9Y343 169 aa11.22□□□□□ -0.61
SCN9A-205ENST00000454569 VCANP13611 3396 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 HACD1B0YJ81 288 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 RNF103O00237 685 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 SLC9A3R1O14745 358 aaPredicted RBP11.21□□□□□ -0.61
SCN9A-205ENST00000454569 MUSKO15146 869 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 ECEL1O95672 775 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 MT-CO1P00395 513 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 JCHAINP01591 159 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 MYBL2P10244 700 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 ADH5P11766 374 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 CCNCP24863 283 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 CD68P34810 354 aaPredicted RBP11.21□□□□□ -0.61
SCN9A-205ENST00000454569 RPL21P46778 160 aaKnown RBP11.21□□□□□ -0.61
SCN9A-205ENST00000454569 YBEYP58557 167 aaPredicted RBP11.21□□□□□ -0.61
SCN9A-205ENST00000454569 GUCY2DQ02846 1103 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 CDH18Q13634 790 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 PTK6Q13882 451 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 DHX34Q14147 1143 aaKnown RBP11.21□□□□□ -0.61
SCN9A-205ENST00000454569 GEN1Q17RS7 908 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 FUT11Q495W5 492 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 C6orf118Q5T5N4 469 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 FAXCQ5TGI0 409 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 DUPD1Q68J44 220 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 GSTA5Q7RTV2 222 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 ZNF354CQ86Y25 554 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 CDKL3Q8IVW4 592 aaPredicted RBP11.21□□□□□ -0.61
SCN9A-205ENST00000454569 ETFBKMTQ8IXQ9 262 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 PGBD5Q8N414 524 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 ATPAF2Q8N5M1 289 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.21□□□□□ -0.61
SCN9A-205ENST00000454569 MAFAQ8NHW3 353 aaPredicted RBP11.21□□□□□ -0.61
SCN9A-205ENST00000454569 RTP4Q96DX8 246 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 PHF7Q9BWX1 381 aaPredicted RBP11.21□□□□□ -0.61
SCN9A-205ENST00000454569 MAGEH1Q9H213 219 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 NEUROG2Q9H2A3 272 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 KCNK12Q9HB15 430 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 EPB41L5Q9HCM4 733 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 FBRSL1Q9HCM7 1045 aaKnown RBP11.21□□□□□ -0.61
SCN9A-205ENST00000454569 ATP13A1Q9HD20 1204 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 RAD54BQ9Y620 910 aa11.21□□□□□ -0.61
SCN9A-205ENST00000454569 MUC22E2RYF6 1773 aaPredicted RBP11.21□□□□□ -0.62
SCN9A-205ENST00000454569 TCRBV7S3A2A0A539 114 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ARHGAP42A6NI28 874 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 K7ERQ8 282 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PPP1R12AO14974 1030 aaPredicted RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 MATN3O15232 486 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 CHADO15335 359 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ZBTB24O43167 697 aaPredicted RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 HOXC11O43248 304 aaPredicted RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 KDELR3O43731 214 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 NARSO43776 548 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PRAMEF11O60813 436 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 TULP3O75386 442 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 CYBBP04839 570 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 NDUFV2P19404 249 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 MX2P20592 715 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 GJA4P35212 333 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ETFBP38117 255 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 OPRD1P41143 372 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 GAD2Q05329 585 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 RUNX3Q13761 415 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PLEKHG6Q3KR16 790 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PARP15Q460N3 678 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ANKRD20A2Q5SQ80 823 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ANKRD20A1Q5TYW2 823 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ANKRD20A3Q5VUR7 823 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 HEATR6Q6AI08 1181 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 IL31Q6EBC2 164 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 BZW1Q7L1Q6 419 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 KIAA0907Q7Z7F0 614 aaPredicted RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ADIPOR2Q86V24 386 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 GSPT2Q8IYD1 628 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 SLC44A3Q8N4M1 653 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 CCDC26Q8TAB7 109 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 SORCS1Q8WY21 1168 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms