RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 LSMEM2Q8N112 164 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 DCBLD1Q8N8Z6 715 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 IFT43Q96FT9 208 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 FEM1CQ96JP0 617 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 CALN1Q9BXU9 219 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 TKTL2Q9H0I9 626 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.62□□□□□ -0.23
HMGB3-204ENST00000448905 ITPR1Q14643 2758 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 LOC400499M0QZD8 3231 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 BECN2A8MW95 431 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 MT-CO3P00414 261 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 SRCP12931 536 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 HNRNPA2B1P22626 353 aaKnown RBP13.61□□□□□ -0.23
HMGB3-204ENST00000448905 ITPKBP27987 946 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 OR1E1P30953 314 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 MTIF2P46199 727 aaKnown RBP13.61□□□□□ -0.23
HMGB3-204ENST00000448905 CXCR3P49682 368 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 CLDN6P56747 220 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 INSM1Q01101 510 aaPredicted RBP13.61□□□□□ -0.23
HMGB3-204ENST00000448905 DEUP1Q05D60 604 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 PROX2Q3B8N5 592 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 GJB7Q6PEY0 223 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 OLFML1Q6UWY5 402 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 FAM183BPQ6ZVS7 135 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 ERN2Q76MJ5 926 aaKnown RBP13.61□□□□□ -0.23
HMGB3-204ENST00000448905 KANSL1Q7Z3B3 1105 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 SLC25A45Q8N413 288 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 TMEM35BQ8NCS4 154 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 ZNF397Q8NF99 534 aaPredicted RBP13.61□□□□□ -0.23
HMGB3-204ENST00000448905 OR2A12Q8NGT7 310 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 OR4C6Q8NH72 309 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 SNIP1Q8TAD8 396 aaKnown RBP13.61□□□□□ -0.23
HMGB3-204ENST00000448905 SLC39A7Q92504 469 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 SHC3Q92529 594 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 DUSP23Q9BVJ7 150 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 HDAC8Q9BY41 377 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 USP29Q9HBJ7 922 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 IPO11Q9UI26 975 aaKnown RBP13.61□□□□□ -0.23
HMGB3-204ENST00000448905 HS3ST3A1Q9Y663 406 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 BPTFQ12830 3046 aa13.61□□□□□ -0.23
HMGB3-204ENST00000448905 CAPN8A6NHC0 703 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 DRGXA6NNA5 263 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 TRIM38O00635 465 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 RIOK3O14730 519 aaKnown RBP13.6□□□□□ -0.23
HMGB3-204ENST00000448905 DAB1O75553 588 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 MT-CO1P00395 513 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 PRLRP16471 622 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 PON1P27169 355 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 TAS2R38P59533 333 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 HNRNPKP61978 463 aaKnown RBP eCLIP13.6□□□□□ -0.23
HMGB3-204ENST00000448905 RPS21P63220 83 aaKnown RBP13.6□□□□□ -0.23
HMGB3-204ENST00000448905 SGCGQ13326 291 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 ZNF284Q2VY69 593 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 ARSIQ5FYB1 569 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 BROXQ5VW32 411 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 ZNF783Q6ZMS7 281 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 KDM7AQ6ZMT4 941 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 GPR155Q7Z3F1 870 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 C14orf80Q86SX3 495 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 ZSCAN30Q86W11 494 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 TMEM145Q8NBT3 493 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 MSANTD4Q8NCY6 345 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 OR52K2Q8NGK3 314 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 KLK6Q92876 244 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 C18orf8Q96DM3 657 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 NPY6RQ99463 290 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 SPON2Q9BUD6 331 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 PRORYQ9H606 182 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 ARHGEF38Q9NXL2 777 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 NCKIPSDQ9NZQ3 722 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 IL36AQ9UHA7 158 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 DNAJC12Q9UKB3 198 aa13.6□□□□□ -0.23
HMGB3-204ENST00000448905 CKAP5Q14008 2032 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 TEX51A0A1B0GUA7 166 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 ILVBLA1L0T0 632 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 FOXN3O00409 490 aaPredicted RBP13.59□□□□□ -0.23
HMGB3-204ENST00000448905 SCAMP1O15126 338 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 ATXN7O15265 892 aaPredicted RBP13.59□□□□□ -0.23
HMGB3-204ENST00000448905 FFAR2O15552 330 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 TLX3O43711 291 aaPredicted RBP13.59□□□□□ -0.23
HMGB3-204ENST00000448905 BRINP1O60477 761 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 SRGAP2O75044 1071 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 CNTN5O94779 1100 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 ADCY5O95622 1261 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 ERBB2P04626 1255 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 GP1BAP07359 652 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 CKMT1AP12532 417 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 SULT1E1P49888 294 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 DNA2P51530 1060 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 SLC25A52Q3SY17 297 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 PIP5KL1Q5T9C9 394 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 Q6ZSR6 202 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 TMC6Q7Z403 805 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 ERICH1Q86X53 443 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 DCAF4L2Q8NA75 395 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 ZNF248Q8NDW4 579 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 PGAP3Q96FM1 320 aaPredicted RBP13.59□□□□□ -0.23
HMGB3-204ENST00000448905 ZNF578Q96N58 590 aaPredicted RBP13.59□□□□□ -0.23
HMGB3-204ENST00000448905 FCRL3Q96P31 734 aaPredicted RBP13.59□□□□□ -0.23
HMGB3-204ENST00000448905 DEPDC7Q96QD5 511 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms