RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 PCDH8O95206 1070 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ACSL3O95573 720 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 IL1BP01584 269 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 KRT10P13645 584 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ABL2P42684 1182 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 SLC5A9Q2M3M2 681 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 PARP6Q2NL67 630 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ATP13A4Q4VNC1 1196 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 CES4AQ5XG92 561 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 CLEC20AQ6ZU45 233 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 DSG4Q86SJ6 1040 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 FAM131BQ86XD5 332 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 RIBC1Q8N443 379 aaPredicted RBP7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ENDOVQ8N8Q3 282 aaKnown RBP7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 UHMK1Q8TAS1 419 aaKnown RBP7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 PRCCQ92733 491 aaPredicted RBP7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ZNF707Q96C28 371 aaPredicted RBP7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ECT2Q9H8V3 914 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 KCNK13Q9HB14 408 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ZDHHC4Q9NPG8 344 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 CYTH4Q9UIA0 394 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 CBX4O00257 560 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 KAT7O95251 611 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ARSAP15289 507 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 CDKN2BP42772 138 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ARSEP51690 589 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 RAD23BP54727 409 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 RPL7AP62424 266 aaKnown RBP7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 AASDHQ4L235 1098 aaPredicted RBP7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 MSS51Q4VC12 460 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 SPATA21Q7Z572 469 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ELSPBP1Q96BH3 223 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 FOXP3Q9BZS1 431 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 NKX1-2Q9UD57 310 aaPredicted RBP7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 RABGEF1Q9UJ41 708 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 VANGL2Q9ULK5 521 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 DUSP12Q9UNI6 340 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 ARL2BPQ9Y2Y0 163 aa7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.55□□□□□ -1.2
CDC42BPA-208ENST00000442054 BDP1A6H8Y1 2624 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 KNTC1P50748 2209 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 hCG_1818297A0A087WSY0 165 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 CCDC189A1A4V9 331 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 KLF8O95600 359 aaPredicted RBP7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 ATF6P18850 670 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 DRD1P21728 446 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 EPHB2P29323 1055 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 ETV4P43268 484 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 OXCT1P55809 520 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 LMNB2Q03252 620 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 RETSATQ6NUM9 610 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 DENND1BQ6P3S1 775 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 TFAP2DQ7Z6R9 452 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 NAT8LQ8N9F0 302 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 ATP11CQ8NB49 1132 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 HJURPQ8NCD3 748 aaPredicted RBP7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 MIEF2Q96C03 454 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 TWNKQ96RR1 684 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 SMOQ99835 787 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 ZWILCHQ9H900 591 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 SP110Q9HB58 689 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 METTL5Q9NRN9 209 aaKnown RBP7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 DNPEPQ9ULA0 475 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 C15orf41Q9Y2V0 281 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 R4GN57 208 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 COCHO43405 550 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 EDF1O60869 148 aaKnown RBP7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 ITGAVP06756 1048 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 TYRP14679 529 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 GNSP15586 552 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 GCKP35557 465 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 DHCR24Q15392 516 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 SLC1A5Q15758 541 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 PDK4Q16654 411 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 SYCP2LQ5T4T6 812 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 TMEM184AQ6ZMB5 413 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 TAOK1Q7L7X3 1001 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 HDDC3Q8N4P3 179 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 DEFB119Q8N690 84 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 SLC4A11Q8NBS3 891 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 HSPH1Q92598 858 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 OTUB2Q96DC9 234 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 ZSWIM3Q96MP5 696 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 OSBPL8Q9BZF1 889 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 XYLT2Q9H1B5 865 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 L3MBTL1Q9Y468 752 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 SCINQ9Y6U3 715 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 GOLGA6L7A0A1B0GV03 622 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 E2F8A0AVK6 867 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 PRR33A8MZF0 331 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 AXIN1O15169 862 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 PEX11AO75192 247 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 CDH16O75309 829 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 PRAMEF12O95522 483 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 ETS1P14921 441 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 CTHP32929 405 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 ASPAP45381 313 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 TPI1P60174 286 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 SNX1Q13596 522 aa7.54□□□□□ -1.2
CDC42BPA-208ENST00000442054 STAT4Q14765 748 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms