RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 LINGO4Q6UY18 593 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 PYROXD2Q8N2H3 581 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 NCAPGQ9BPX3 1015 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 MAGEH1Q9H213 219 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 NEUROG2Q9H2A3 272 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 CATSPERBQ9H7T0 1116 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 HPCAL4Q9UM19 191 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 CACNA1AO00555 2505 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 SPTBN2O15020 2390 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 A0A087X0T9 212 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 A0A1B0GTW7 788 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 DCDC2BA2VCK2 349 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 LRRC72A6NJI9 287 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 K7ERQ8 282 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 MCF2LO15068 1137 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 PRPSAP2O60256 369 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 ZMPSTE24O75844 475 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 FSBPO95073 299 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 SYPP08247 313 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 FAM228BP0C875 321 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 HTR7P34969 479 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 ACVRL1P37023 503 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 RECQLP46063 649 aaPredicted RBP15.53■□□□□ 0.08
LIMS3-201ENST00000437679 DAB2IPQ5VWQ8 1189 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 ALKBH5Q6P6C2 394 aaKnown RBP15.53■□□□□ 0.08
LIMS3-201ENST00000437679 VSTM4Q8IW00 320 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 ZCCHC9Q8N567 271 aaKnown RBP15.53■□□□□ 0.08
LIMS3-201ENST00000437679 AADATQ8N5Z0 425 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 RTL3Q8N8U3 475 aaKnown RBP15.53■□□□□ 0.08
LIMS3-201ENST00000437679 OR8K1Q8NGG5 319 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 ACE2Q9BYF1 805 aaPredicted RBP15.53■□□□□ 0.08
LIMS3-201ENST00000437679 TRIM7Q9C029 511 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 CAPN10Q9HC96 672 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 NDFIP2Q9NV92 336 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 ZNHIT6Q9NWK9 470 aaKnown RBP15.53■□□□□ 0.08
LIMS3-201ENST00000437679 DONSONQ9NYP3 566 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 ARHGAP20Q9P2F6 1191 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 SERGEFQ9UGK8 458 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 PCSK1NQ9UHG2 260 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 EIF2B4Q9UI10 523 aaKnown RBP15.53■□□□□ 0.08
LIMS3-201ENST00000437679 AP4E1Q9UPM8 1137 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 NEU3Q9UQ49 428 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.53■□□□□ 0.08
LIMS3-201ENST00000437679 CHD5Q8TDI0 1954 aa15.53■□□□□ 0.08
LIMS3-201ENST00000437679 DNAH14Q0VDD8 3507 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 CXorf51AA0A1B0GTR3 108 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 FAM47DPA6NHR8 397 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 EIF3CLB5ME19 914 aaKnown RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 BCAT2O15382 392 aaPredicted RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 FGF10O15520 208 aaPredicted RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 SMAD6O43541 496 aaKnown RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 MIPP30301 263 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 HNRNPH3P31942 346 aaKnown RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 MAPK8P45983 427 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 SERPINH1P50454 418 aaKnown RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 GEMIN4P57678 1058 aaKnown RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 TPI1P60174 286 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 ARF5P84085 180 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 ZNF252P-AS1Q0IIN9 211 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 ACAP1Q15027 740 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 POLD3Q15054 466 aaPredicted RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 CCDC122Q5T0U0 273 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 ERMARDQ5T6L9 678 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 KIAA0895LQ68EN5 471 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 C22orf39Q6P5X5 142 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 ZNF354CQ86Y25 554 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 OR2T34Q8NGX1 318 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 PIP4K2CQ8TBX8 421 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 ARHGEF2Q92974 986 aaKnown RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 EIF3CQ99613 913 aaKnown RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 GTPBP2Q9BX10 602 aaKnown RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 CEP44Q9C0F1 390 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 THAP2Q9H0W7 228 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 DHX35Q9H5Z1 703 aaKnown RBP15.52■□□□□ 0.08
LIMS3-201ENST00000437679 GPATCH2LQ9NWQ4 482 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 PPM1HQ9ULR3 514 aa15.52■□□□□ 0.08
LIMS3-201ENST00000437679 LAMA1P25391 3075 aa15.52■□□□□ 0.07
LIMS3-201ENST00000437679 ADAMTS9Q9P2N4 1935 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 ARHGAP33O14559 1287 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 CDX4O14627 284 aaPredicted RBP15.51■□□□□ 0.07
LIMS3-201ENST00000437679 SLC7A4O43246 635 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 PRNPP04156 253 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 CHRNA3P32297 505 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 EIF4A3P38919 411 aaKnown RBP15.51■□□□□ 0.07
LIMS3-201ENST00000437679 DNA2P51530 1060 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 GALCP54803 685 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 FOXK2Q01167 660 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 SEMA3BQ13214 749 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 UAP1L1Q3KQV9 507 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 NCEH1Q6PIU2 408 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.51■□□□□ 0.07
LIMS3-201ENST00000437679 ARFGAP1Q8N6T3 406 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 PCDH20Q8N6Y1 951 aaKnown RBP15.51■□□□□ 0.07
LIMS3-201ENST00000437679 OR2A12Q8NGT7 310 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 OR14C36Q8NHC7 312 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 BIRC7Q96CA5 298 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 DNAJC7Q99615 494 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 SNRNP25Q9BV90 132 aaKnown RBP15.51■□□□□ 0.07
LIMS3-201ENST00000437679 TNKS2Q9H2K2 1166 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 DEF6Q9H4E7 631 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms