RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ERVMER34-1Q9H9K5 563 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 CAPN10Q9HC96 672 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 PREBQ9HCU5 417 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 PARD6AQ9NPB6 346 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 DYRK4Q9NR20 520 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 DNAAF2Q9NVR5 837 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 KCTD5Q9NXV2 234 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 ZNF212Q9UDV6 495 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 CNOT8Q9UFF9 292 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 MBD1Q9UIS9 605 aaPredicted RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 CYP8B1Q9UNU6 501 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 MFHAS1Q9Y4C4 1052 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 RAD54BQ9Y620 910 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 RIF1Q5UIP0 2472 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 OTOGLQ3ZCN5 2332 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 MUC22E2RYF6 1773 aaPredicted RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 A0A1W2PPC4 97 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 CFAP69A5D8W1 941 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 ARHGAP42A6NI28 874 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 MEI4A8MW99 385 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 TTC34A8MYJ7 566 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 ZNF487B1APH4 448 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 C10orf142B7Z368 130 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 DCLK1O15075 740 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 VILLO15195 856 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 DAPK3O43293 454 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 CCP110O43303 1012 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 LATO43561 262 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 TSPAN6O43657 245 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 AP1G1O43747 822 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 OPHN1O60890 802 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 ZMPSTE24O75844 475 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 CNTN5O94779 1100 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 TRIM16O95361 564 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 GSRP00390 522 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 IL1BP01584 269 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 CYP1A2P05177 515 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 KRT7P08729 469 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 SRCP12931 536 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 TFE3P19532 575 aaPredicted RBP6.53□□□□□ -1.36
USP54-202ENST00000413442 BCKDHBP21953 392 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 PSMA2P25787 234 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 CHRNA3P32297 505 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 HSPA9P38646 679 aaKnown RBP6.53□□□□□ -1.36
USP54-202ENST00000413442 ARL4AP40617 200 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 SLC1A1P43005 524 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 PTGER3P43115 390 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 MAPK8P45983 427 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 SERPINH1P50454 418 aaKnown RBP6.53□□□□□ -1.36
USP54-202ENST00000413442 RENBPP51606 427 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 GALCP54803 685 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 RPL7AP62424 266 aaKnown RBP6.53□□□□□ -1.36
USP54-202ENST00000413442 POLR2LP62875 67 aaKnown RBP6.53□□□□□ -1.36
USP54-202ENST00000413442 IRX4P78413 519 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 SEMA3BQ13214 749 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 SERINC3Q13530 473 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 PDK2Q15119 407 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 TCEAL1Q15170 157 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 NFKBIBQ15653 356 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 LPAL2Q16609 132 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 CDO1Q16878 200 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 C15orf59Q2T9L4 293 aaPredicted RBP6.53□□□□□ -1.36
USP54-202ENST00000413442 ALFQ53S48 1182 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 C2CD6Q53TS8 623 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 CARD16Q5EG05 197 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 CCDC122Q5T0U0 273 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 DCAF12L1Q5VU92 463 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 KIAA0895LQ68EN5 471 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 TRNP1Q6NT89 227 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 RWDD4Q6NW29 188 aaKnown RBP6.53□□□□□ -1.36
USP54-202ENST00000413442 DBX2Q6ZNG2 339 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 TRIM69Q86WT6 500 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 RHOT2Q8IXI1 618 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 CCDC170Q8IYT3 715 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 BBS5Q8N3I7 341 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 TXLNBQ8N3L3 684 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 MFSD2AQ8NA29 543 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 C1orf216Q8TAB5 229 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 GANCQ8TET4 914 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 CTNNBL1Q8WYA6 563 aaPredicted RBP6.53□□□□□ -1.36
USP54-202ENST00000413442 RMDN1Q96DB5 314 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 IFT43Q96FT9 208 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 FEM1CQ96JP0 617 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 RPL10LQ96L21 214 aaKnown RBP6.53□□□□□ -1.36
USP54-202ENST00000413442 CCDC42Q96M95 316 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 HSPA12BQ96MM6 686 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 ZNF599Q96NL3 588 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 MCEEQ96PE7 176 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 HEPHQ9BQS7 1158 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 DEF6Q9H4E7 631 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 ATP13A1Q9HD20 1204 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 MPP6Q9NZW5 540 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 AMACRQ9UHK6 382 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 VPS51Q9UID3 782 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.53□□□□□ -1.36
USP54-202ENST00000413442 HS3ST3A1Q9Y663 406 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 ZNF292O60281 2723 aa6.53□□□□□ -1.36
USP54-202ENST00000413442 TBC1D3DA0A087WVF3 549 aa6.52□□□□□ -1.37
USP54-202ENST00000413442 TBC1D3IA0A087WXS9 549 aa6.52□□□□□ -1.37
USP54-202ENST00000413442 TBC1D3EA0A087X179 549 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms