RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 MARK4Q96L34 752 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 PRICKLE1Q96MT3 831 aaPredicted RBP12.93□□□□□ -0.34
SHMT1-205ENST00000395684 DUSP16Q9BY84 665 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 COPS7BQ9H9Q2 264 aaPredicted RBP12.93□□□□□ -0.34
SHMT1-205ENST00000395684 UBP1Q9NZI7 540 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 RIMS3Q9UJD0 308 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 COL1A2P08123 1366 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 PHGDHO43175 533 aaKnown RBP12.93□□□□□ -0.34
SHMT1-205ENST00000395684 H2AFYO75367 372 aaKnown RBP12.93□□□□□ -0.34
SHMT1-205ENST00000395684 CRTAMO95727 393 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 FYNP06241 537 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 ADRA1BP35368 520 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 RABGGTBP53611 331 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 SLC5A9Q2M3M2 681 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 PAQR9Q6ZVX9 377 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 ZNF410Q86VK4 478 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 OSTM1Q86WC4 334 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 TICAM1Q8IUC6 712 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 LSMEM2Q8N112 164 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 WNT8BQ93098 351 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 LRGUKQ96M69 825 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 CATSPER2Q96P56 530 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 ADAMTS10Q9H324 1103 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 EPB41L1Q9H4G0 881 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 VPS28Q9UK41 221 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 SMIM28A0A1B0GU29 152 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 ASB14A6NK59 587 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 VILLO15195 856 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 ENO3P13929 434 aaPredicted RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 PPARGP37231 505 aaPredicted RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 ADCYAP1R1P41586 468 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 CSE1LP55060 971 aaKnown RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 PPIDQ08752 370 aaKnown RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 NSUN2Q08J23 767 aaKnown RBP eCLIP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 ADGRE1Q14246 886 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 ARMC3Q5W041 872 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 CATSPER4Q7RTX7 472 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 METTL25Q8N6Q8 603 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 B3GALNT2Q8NCR0 500 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 APPL2Q8NEU8 664 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 BHLHE22Q8NFJ8 381 aaPredicted RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 PPP1R13LQ8WUF5 828 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 DGCR14Q96DF8 476 aaKnown RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 GPR22Q99680 433 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 APBA2Q99767 749 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 GDAP2Q9NXN4 497 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 UBQLN1Q9UMX0 589 aaKnown RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 LZTS1Q9Y250 596 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 LTBP3Q9NS15 1303 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 BPTFQ12830 3046 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 NRP1O14786 923 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 NFKB1P19838 968 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 GABRB3P28472 473 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 AVPR1AP37288 418 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 SOX4Q06945 474 aaPredicted RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 SEMA3BQ13214 749 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 TTLL12Q14166 644 aaPredicted RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 PPP2R5DQ14738 602 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 ANO4Q32M45 955 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 MOB2Q70IA6 237 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 ZC3HC1Q86WB0 502 aaKnown RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 SLC2A13Q96QE2 648 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 HNRNPABQ99729 332 aaKnown RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 PKP2Q99959 881 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 FAM49AQ9H0Q0 323 aaPredicted RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 GBA3Q9H227 469 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 WDR6Q9NNW5 1121 aaKnown RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 STAP1Q9ULZ2 295 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 RUVBL2Q9Y230 463 aaKnown RBP12.92□□□□□ -0.34
SHMT1-205ENST00000395684 AP4B1Q9Y6B7 739 aa12.92□□□□□ -0.34
SHMT1-205ENST00000395684 MYOCOSA0A1B0GUC4 107 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 MAGEB16A2A368 324 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 ADM5C9JUS6 153 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 CABYRO75952 493 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 CLPTM1O96005 669 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 SLC35E2BP0CK96 405 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 RPL5P46777 297 aaKnown RBP12.91□□□□□ -0.34
SHMT1-205ENST00000395684 RARS2Q5T160 578 aaKnown RBP12.91□□□□□ -0.34
SHMT1-205ENST00000395684 NXNQ6DKJ4 435 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 LIMS2Q7Z4I7 341 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 CENPLQ8N0S6 344 aaPredicted RBP12.91□□□□□ -0.34
SHMT1-205ENST00000395684 PGAM4Q8N0Y7 254 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 FSTL5Q8N475 847 aaPredicted RBP12.91□□□□□ -0.34
SHMT1-205ENST00000395684 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.91□□□□□ -0.34
SHMT1-205ENST00000395684 KCTD4Q8WVF5 259 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 CNBD2Q96M20 576 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 KLHL32Q96NJ5 620 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 RNF39Q9H2S5 420 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 MROH8Q9H579 483 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 WDR41Q9HAD4 459 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 ZBTB26Q9HCK0 441 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 TLK1Q9UKI8 766 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 RAB26Q9ULW5 256 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 TARM1B6A8C7 271 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 NPR3P17342 541 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 NPY2RP49146 381 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 CDKL1Q00532 357 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 MYBPC1Q00872 1141 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 PRKAA1Q13131 559 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms