RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 CLLU1OSQ5K130 101 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 HIBCHQ6NVY1 386 aaPredicted RBP8.26□□□□□ -1.09
LIMS1-203ENST00000393310 IYDQ6PHW0 289 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 VITQ6UXI7 678 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 CTAGE4Q8IX94 777 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 KIRREL3Q8IZU9 778 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ATAD1Q8NBU5 361 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 TTC17Q96AE7 1141 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 TMEM159Q96B96 161 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 HDAC11Q96DB2 347 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ZFP42Q96MM3 310 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 CWH43Q9H720 699 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 RAD18Q9NS91 495 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ATAD3AQ9NVI7 634 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 NDE1Q9NXR1 346 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 TRIM10Q9UDY6 481 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 VPS28Q9UK41 221 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 MSRB2Q9Y3D2 182 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 CNTNAP5Q8WYK1 1306 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 A0A1W2PQ67 120 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ZBTB39O15060 712 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 CPP00450 1065 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ALDH18A1P54886 795 aaKnown RBP8.26□□□□□ -1.09
LIMS1-203ENST00000393310 PTK2Q05397 1052 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 EFEMP1Q12805 493 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 MTFR2Q6P444 385 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 UNC5DQ6UXZ4 953 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 SCUBE3Q8IX30 993 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 TMEFF1Q8IYR6 380 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 C10orf53Q8N6V4 93 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 KCTD4Q8WVF5 259 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 PSMG2Q969U7 264 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 MAGEB10Q96LZ2 347 aaPredicted RBP8.26□□□□□ -1.09
LIMS1-203ENST00000393310 OLFM1Q99784 485 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 CALN1Q9BXU9 219 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 TMEM245Q9H330 911 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 AGPAT4Q9NRZ5 378 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 MARCH2Q9P0N8 246 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 KIF17Q9P2E2 1029 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ARL2BPQ9Y2Y0 163 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ARHGAP10A1A4S6 786 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ENGP17813 658 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ACO1P21399 889 aaKnown RBP8.26□□□□□ -1.09
LIMS1-203ENST00000393310 PSMC2P35998 433 aaKnown RBP8.26□□□□□ -1.09
LIMS1-203ENST00000393310 VIPR2P41587 438 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 SKIV2L2P42285 1042 aaKnown RBP8.26□□□□□ -1.09
LIMS1-203ENST00000393310 CFHR1Q03591 330 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ELP6Q0PNE2 266 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 N4BP2L1Q5TBK1 243 aaPredicted RBP8.26□□□□□ -1.09
LIMS1-203ENST00000393310 TRMT10CQ7L0Y3 403 aaKnown RBP8.26□□□□□ -1.09
LIMS1-203ENST00000393310 PDZD3Q86UT5 571 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 UNC93AQ86WB7 457 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ARL14EPQ8N8R7 260 aaPredicted RBP8.26□□□□□ -1.09
LIMS1-203ENST00000393310 IGDCC4Q8TDY8 1250 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 CCDC138Q96M89 665 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 ZNF578Q96N58 590 aaPredicted RBP8.26□□□□□ -1.09
LIMS1-203ENST00000393310 TEX12Q9BXU0 123 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 LCMT1Q9UIC8 334 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 SPATA2Q9UM82 520 aa8.26□□□□□ -1.09
LIMS1-203ENST00000393310 LRRC37AA6NMS7 1700 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 DOCK2Q92608 1830 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 AP3D1O14617 1153 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 PFKFB2O60825 505 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 PMPCBO75439 489 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 ITGB3P05106 788 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 ARL4AP40617 200 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 SPAG1Q07617 926 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 CYTH1Q15438 398 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 STX1AQ16623 288 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 DCAF17Q5H9S7 520 aaPredicted RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 CCDC183Q5T5S1 534 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 ZNF598Q86UK7 904 aaKnown RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 AKAP14Q86UN6 197 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 TBC1D19Q8N5T2 526 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 SPERTQ8NA61 448 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 SERAC1Q96JX3 654 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 RAB3IPQ96QF0 476 aaPredicted RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 CDT1Q9H211 546 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 EPB41L5Q9HCM4 733 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 TEKT2Q9UIF3 430 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 SOX13Q9UN79 622 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 HES2Q9Y543 173 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 PCDHB4Q9Y5E5 795 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 A0A087X0B3 334 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 KLK10O43240 276 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 TLR5O60602 858 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 RNGTTO60942 597 aaKnown RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 MAP3K6O95382 1288 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 HAPLN1P10915 354 aaPredicted RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 CCR10P46092 362 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 NTHL1P78549 312 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 PPIDQ08752 370 aaKnown RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 DNAJC3Q13217 504 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 SLC12A1Q13621 1099 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 CAPSQ13938 189 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 NR1D2Q14995 579 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 CHST9Q7L1S5 443 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 NAXDQ8IW45 347 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 MINDY2Q8NBR6 621 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms