RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ABI3BPQ7Z7G0 1075 aa14.21□□□□□ -0.13
VPS29-201ENST00000360579 SH2D3CQ8N5H7 860 aa14.21□□□□□ -0.13
VPS29-201ENST00000360579 STK32AQ8WU08 396 aa14.21□□□□□ -0.13
VPS29-201ENST00000360579 SLC46A1Q96NT5 459 aa14.21□□□□□ -0.13
VPS29-201ENST00000360579 RPRD1AQ96P16 312 aaPredicted RBP14.21□□□□□ -0.13
VPS29-201ENST00000360579 PRMT1Q99873 361 aaKnown RBP14.21□□□□□ -0.13
VPS29-201ENST00000360579 FEM1AQ9BSK4 669 aa14.21□□□□□ -0.13
VPS29-201ENST00000360579 SRRTQ9BXP5 876 aaKnown RBP14.21□□□□□ -0.13
VPS29-201ENST00000360579 OSBPL2Q9H1P3 480 aa14.21□□□□□ -0.13
VPS29-201ENST00000360579 METTL14Q9HCE5 456 aaKnown RBP14.21□□□□□ -0.13
VPS29-201ENST00000360579 RMND1Q9NWS8 449 aa14.21□□□□□ -0.13
VPS29-201ENST00000360579 DNAJC28Q9NX36 388 aa14.21□□□□□ -0.13
VPS29-201ENST00000360579 VPS28Q9UK41 221 aa14.21□□□□□ -0.13
VPS29-201ENST00000360579 SATB2Q9UPW6 733 aa14.21□□□□□ -0.13
VPS29-201ENST00000360579 PIEZO2Q9H5I5 2752 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.2□□□□□ -0.14
VPS29-201ENST00000360579 LY6G6EA0A0G2JKS1 128 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 RNF225M0QZC1 329 aaPredicted RBP14.2□□□□□ -0.14
VPS29-201ENST00000360579 KPNA3O00505 521 aaPredicted RBP14.2□□□□□ -0.14
VPS29-201ENST00000360579 BNIP3LO60238 219 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 TCEA3O75764 348 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 PRNPP04156 253 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 CCR1P32246 355 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 FMO5P49326 533 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 NUMBP49757 651 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 SKOR1P84550 965 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 ZNF177Q13360 481 aaPredicted RBP14.2□□□□□ -0.14
VPS29-201ENST00000360579 COBLL1Q53SF7 1204 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 CCDC81Q6ZN84 652 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 CIR1Q86X95 450 aaPredicted RBP14.2□□□□□ -0.14
VPS29-201ENST00000360579 SMYD4Q8IYR2 804 aaPredicted RBP14.2□□□□□ -0.14
VPS29-201ENST00000360579 ARL14Q8N4G2 192 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 TMIEQ8NEW7 156 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 SNX21Q969T3 373 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 ALG14Q96F25 216 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 THAP9Q9H5L6 903 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 FAM204AQ9H8W3 233 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 HS3ST2Q9Y278 367 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 HS3ST3A1Q9Y663 406 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 CSNK1G3Q9Y6M4 447 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 U3KQA8 63 aa14.2□□□□□ -0.14
VPS29-201ENST00000360579 CLDN11O75508 207 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 PCDH8O95206 1070 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 CHRNA3P32297 505 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 CSRP3P50461 194 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 KRT83P78385 493 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 KRT85P78386 507 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 CDK17Q00537 523 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 GCNT1Q02742 428 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 LRRC63Q05C16 580 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 EIF4EBP2Q13542 120 aaPredicted RBP14.19□□□□□ -0.14
VPS29-201ENST00000360579 FBXL22Q6P050 247 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 GCNT7Q6ZNI0 430 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 RBM44Q6ZP01 1051 aaKnown RBP14.19□□□□□ -0.14
VPS29-201ENST00000360579 Q6ZSR6 202 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 PTAR1Q7Z6K3 402 aaPredicted RBP14.19□□□□□ -0.14
VPS29-201ENST00000360579 PARGQ86W56 976 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 SLC22A18ASQ8N1D0 253 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 WDR48Q8TAF3 677 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 KLK6Q92876 244 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 PPP1R16AQ96I34 528 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 C2orf49Q9BVC5 232 aaPredicted RBP14.19□□□□□ -0.14
VPS29-201ENST00000360579 SLC4A5Q9BY07 1137 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 FZD3Q9NPG1 666 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 SALL4Q9UJQ4 1053 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 OR51B4Q9Y5P0 310 aa14.19□□□□□ -0.14
VPS29-201ENST00000360579 HEMK1Q9Y5R4 338 aaPredicted RBP14.19□□□□□ -0.14
VPS29-201ENST00000360579 A0A1W2PQ27 194 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 A0A1W2PQ64 194 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 CYSRT1A8MQ03 144 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 P4HA2O15460 535 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 MED7O43513 233 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 CSF2P04141 144 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 CTSLP07711 333 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 MYF5P13349 255 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 NME1P15531 152 aaKnown RBP14.18□□□□□ -0.14
VPS29-201ENST00000360579 TGM2P21980 687 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 PRCPP42785 496 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 CLDN2P57739 230 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 AUHQ13825 339 aaKnown RBP14.18□□□□□ -0.14
VPS29-201ENST00000360579 KIAA1614Q5VZ46 1190 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 KIAA1161Q6NSJ0 714 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 XKR5Q6UX68 686 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 KYAT3Q6YP21 454 aaKnown RBP14.18□□□□□ -0.14
VPS29-201ENST00000360579 ERN2Q76MJ5 926 aaKnown RBP14.18□□□□□ -0.14
VPS29-201ENST00000360579 PRICKLE2Q7Z3G6 844 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 TMEM110Q86TL2 294 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 ZSCAN30Q86W11 494 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 EFCAB3Q8N7B9 438 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 ATP11CQ8NB49 1132 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 ZNF548Q8NEK5 533 aaPredicted RBP14.18□□□□□ -0.14
VPS29-201ENST00000360579 OR2A12Q8NGT7 310 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 WDR36Q8NI36 951 aaKnown RBP14.18□□□□□ -0.14
VPS29-201ENST00000360579 GLMNQ92990 594 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 ATXN7L3BQ96GX2 97 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 NOX5Q96PH1 765 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 HDAC8Q9BY41 377 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 GTPBP4Q9BZE4 634 aaKnown RBP14.18□□□□□ -0.14
VPS29-201ENST00000360579 FAM117AQ9C073 453 aa14.18□□□□□ -0.14
VPS29-201ENST00000360579 MUC3BQ9H195 1237 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms