RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 MKS1Q9NXB0 559 aa8.79□□□□□ -1
TRIM55-204ENST00000353317 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.79□□□□□ -1
TRIM55-204ENST00000353317 USP3Q9Y6I4 520 aa8.79□□□□□ -1
TRIM55-204ENST00000353317 SDR42E2A6NKP2 422 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 PRPSAP2O60256 369 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 CIB2O75838 187 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 KRT38O76015 456 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 SNUPNO95149 360 aaKnown RBP8.78□□□□□ -1
TRIM55-204ENST00000353317 BAG2O95816 211 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 ZBED1O96006 694 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 GSRP00390 522 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 LINC00271P0C7V0 271 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 CRABP2P29373 138 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 CRHR1P34998 444 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 CPOXP36551 454 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 POLE2P56282 527 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 AP2B1P63010 937 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 IRX4P78413 519 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 DSG1Q02413 1049 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 DNAL1Q4LDG9 190 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 AP1ARQ63HQ0 302 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 PM20D1Q6GTS8 502 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 ZNF534Q76KX8 674 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 ARCQ7LC44 396 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 SPRED2Q7Z698 418 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 SCD5Q86SK9 330 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 MFN1Q8IWA4 741 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 SIX6OS1Q8N1H7 587 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 MTBPQ96DY7 904 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 TRAPPC9Q96Q05 1148 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 TUBGCP5Q96RT8 1024 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 ECSITQ9BQ95 431 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 KLC2Q9H0B6 622 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 C1orf21Q9H246 121 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 NDE1Q9NXR1 346 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.78□□□□□ -1
TRIM55-204ENST00000353317 MRPL42Q9Y6G3 142 aaKnown RBP8.78□□□□□ -1
TRIM55-204ENST00000353317 TRANK1O15050 2925 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 UNC80Q8N2C7 3258 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 PLXNA4Q9HCM2 1894 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 A0A088AWK7 358 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 SYN3O14994 580 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 PARNO95453 639 aaKnown RBP8.78□□□□□ -1
TRIM55-204ENST00000353317 METTL18O95568 372 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 L1CAMP32004 1257 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 SCNN1AP37088 669 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 GRIK1P39086 918 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 GRIA1P42261 906 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 MAGEA3P43357 314 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 MAGEA6P43360 314 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 SLC5A3P53794 718 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 TSPY1Q01534 308 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 CDK18Q07002 472 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 CDC16Q13042 620 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 STX3Q13277 289 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 KRT81Q14533 505 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 RBBP5Q15291 538 aaKnown RBP8.78□□□□□ -1
TRIM55-204ENST00000353317 SLC25A52Q3SY17 297 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 EFHC1Q5JVL4 640 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 C6orf163Q5TEZ5 329 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 SPATA2LQ8IUW3 424 aaPredicted RBP8.78□□□□□ -1
TRIM55-204ENST00000353317 SCN4BQ8IWT1 228 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 LRRC43Q8N309 656 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 CCDC33Q8N5R6 958 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 PCDH19Q8TAB3 1148 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 ZFAND2BQ8WV99 257 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 AUTS2Q8WXX7 1259 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 BADQ92934 168 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 IGSF21Q96ID5 467 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 SIGLEC10Q96LC7 697 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 ZNF778Q96MU6 729 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 NR1H4Q96RI1 486 aaPredicted RBP8.78□□□□□ -1
TRIM55-204ENST00000353317 TMEM106CQ9BVX2 250 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 COLEC11Q9BWP8 271 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 FRMD8Q9BZ67 464 aaPredicted RBP8.78□□□□□ -1
TRIM55-204ENST00000353317 WDR6Q9NNW5 1121 aaKnown RBP8.78□□□□□ -1
TRIM55-204ENST00000353317 DMAP1Q9NPF5 467 aaPredicted RBP8.78□□□□□ -1
TRIM55-204ENST00000353317 MAD1L1Q9Y6D9 718 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 PLXNA3P51805 1871 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 EYSQ5T1H1 3165 aa8.78□□□□□ -1
TRIM55-204ENST00000353317 FAM159BA6NKW6 160 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 FAM72CH0Y354 149 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 M0QYT0 321 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 BIRC5O15392 142 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 BUD23O43709 281 aaKnown RBP8.77□□□□□ -1.01
TRIM55-204ENST00000353317 ITM2AO43736 263 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 DAB1O75553 588 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 LYPLA1O75608 230 aaPredicted RBP8.77□□□□□ -1.01
TRIM55-204ENST00000353317 SYN1P17600 705 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 AOC1P19801 751 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 SULT1E1P49888 294 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 SLC25A3Q00325 362 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 PDE1BQ01064 536 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 WASHC5Q12768 1159 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 NME3Q13232 169 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 TUBB3Q13509 450 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 ARTNQ5T4W7 220 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 FAM72AQ5TYM5 149 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 BSPRYQ5W0U4 402 aa8.77□□□□□ -1.01
TRIM55-204ENST00000353317 FAM72DQ6L9T8 149 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms