RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ROPN1LQ96C74 230 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 SPATA5L1Q9BVQ7 753 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 MID1IP1Q9NPA3 183 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 SPIRE1Q08AE8 756 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF280DQ6N043 979 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 BHLHB9Q6PI77 547 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 LAYNQ6UX15 382 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 ADAMTSL2Q86TH1 951 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 SERHL2Q9H4I8 314 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 SERHLQ9NQF3 203 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 BCLAF3A2AJT9 711 aaKnown RBP10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 ATG7O95352 703 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF682O95780 498 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 TUBA4AP68366 448 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 ADGRD1Q6QNK2 874 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 PHC3Q8NDX5 983 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 OTULINQ96BN8 352 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 POP1Q99575 1024 aaKnown RBP10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 HBS1LQ9Y450 684 aaKnown RBP10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 CXCL11O14625 94 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 PRRG1O14668 218 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 SNAPC5O75971 98 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 WARSP23381 471 aaKnown RBP10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 CAMK2GQ13555 558 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF605Q86T29 641 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 PQLC1Q8N2U9 271 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 LRRC52Q8N7C0 313 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 REPS2Q8NFH8 660 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 GSTK1Q9Y2Q3 226 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 UBE2Q2LH0YL09 131 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 NDST1P52848 882 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 CSHL1Q14406 222 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 PAGE2BQ5JRK9 111 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 TMC5Q6UXY8 1006 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 TMEM161BQ8NDZ6 487 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 MTERF3Q96E29 417 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 CHST7Q9NS84 486 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 EFCAB10A6NFE3 127 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 BNIP3LO60238 219 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 JCHAINP01591 159 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 DSG3P32926 999 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 AVPR1AP37288 418 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 ANGPT1Q15389 498 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 MZT2AQ6P582 158 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 PLPPR4Q7Z2D5 763 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 PIGWQ7Z7B1 504 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 CLVS1Q8IUQ0 354 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 C4orf32Q8N8J7 132 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 ZSWIM2Q8NEG5 633 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 GINS4Q9BRT9 223 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 POLR1EQ9GZS1 481 aaKnown RBP10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 CD320Q9NPF0 282 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 ABCC13Q9NSE7 274 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 PCDHB7Q9Y5E2 793 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 MEI4A8MW99 385 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 NPR3P17342 541 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 MCOLN3Q8TDD5 553 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 RPRD1AQ96P16 312 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 EPB41L4BQ9H329 900 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 GNPTGQ9UJJ9 305 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 BTBD3Q9Y2F9 522 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 C10orf71Q711Q0 1435 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 TULP3O75386 442 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ASS1P00966 412 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 SNHG28P0DPA3 235 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 DGKAP23743 735 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 MGAT1P26572 445 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 TMEM63BQ5T3F8 832 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF276Q8N554 614 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 TOP1MTQ969P6 601 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 RHOJQ9H4E5 214 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ACTR8Q9H981 624 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 MIEF1Q9NQG6 463 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 DPP7Q9UHL4 492 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 MMP8P22894 467 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 TGFBR2P37173 567 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 GLRBP48167 497 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 IL5RAQ01344 420 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 SREBF2Q12772 1141 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 RNF157Q96PX1 679 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ACE2Q9BYF1 805 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ADAM33Q9BZ11 813 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 GRIP2Q9C0E4 1043 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 MTIF3Q9H2K0 278 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 VPS51Q9UID3 782 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 DHRS12A0PJE2 317 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 FAM20BO75063 409 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ITGA2BP08514 1039 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 CCDC166P0CW27 439 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 SOAT1P35610 550 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 PRKG2Q13237 762 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 PYDC1Q8WXC3 89 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 PRCCQ92733 491 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 C1orf232A0A0U1RR37 186 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 BST1Q10588 318 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 SMARCB1Q12824 385 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 UCMAQ8WVF2 138 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ZFYVE19Q96K21 471 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 SNX6Q9UNH7 406 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 SGTAO43765 313 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms