RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	RIPK2	O43353	540 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	CLDN11	O75508	207 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	PEX11B	O96011	259 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	SHBG	P04278	402 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	NFKB1	P19838	968 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	GLDC	P23378	1020 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	MAPKAPK2	P49137	400 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	GNA12	Q03113	381 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	SLC10A7	Q0GE19	358 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	SERINC3	Q13530	473 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	SEMA5A	Q13591	1074 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	BBS9	Q3SYG4	887 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	TCEAL5	Q5H9L2	206 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	RARS2	Q5T160	578 aa	Known RBP	10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	IL31	Q6EBC2	164 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	C4orf22	Q6V702	233 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	DDI1	Q8WTU0	396 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	ARHGEF2	Q92974	986 aa	Known RBP	10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	SERPINB12	Q96P63	405 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	DDX50	Q9BQ39	737 aa	Known RBP	10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	GORASP1	Q9BQQ3	440 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	TSPYL1	Q9H0U9	437 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	LINC00597	Q9H2U6	94 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	SP110	Q9HB58	689 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	RSPH14	Q9UHP6	348 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	CLEC4E	Q9ULY5	219 aa		10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	10.69	□□□□□ -0.7
NECAP1-223	ENST00000640091	MYO18A	Q92614	2054 aa	Known RBP	10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	OBSL1	O75147	1896 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091		A0A1B0GVM2	712 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	TTC24	A2A3L6	582 aa	Predicted RBP	10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	TCAF2	A6NFQ2	919 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	ZNF197	O14709	1029 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	USP12	O75317	370 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	GLP2R	O95838	553 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	FDFT1	P37268	417 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	ETFB	P38117	255 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	ARL4C	P56559	192 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	ZNF33A	Q06730	810 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	HYAL1	Q12794	435 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	PARP15	Q460N3	678 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	ALS2CL	Q60I27	953 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	TIGD7	Q6NT04	549 aa	Predicted RBP	10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	ELMSAN1	Q6PJG2	1045 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	CENPU	Q71F23	418 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	CAND1	Q86VP6	1230 aa	Known RBP	10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	LRRC49	Q8IUZ0	686 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	PDIK1L	Q8N165	341 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	AGGF1	Q8N302	714 aa	eCLIP	10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	TDRD5	Q8NAT2	981 aa	Known RBP	10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	LEMD2	Q8NC56	503 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	SPATA22	Q8NHS9	363 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	WFDC5	Q8TCV5	224 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	EXOC4	Q96A65	974 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	VAT1	Q99536	393 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	ZNF576	Q9H609	170 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	NINJ2	Q9NZG7	142 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	IGSF9	Q9P2J2	1179 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	TRHDE	Q9UKU6	1024 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	NFS1	Q9Y697	457 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	NOTCH4	Q99466	2003 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	DOCK4	Q8N1I0	1966 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	SHROOM3	Q8TF72	1996 aa		10.68	□□□□□ -0.7
NECAP1-223	ENST00000640091	NDC80	O14777	642 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	ALOX15B	O15296	676 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	TTC4	O95801	387 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	LATS1	O95835	1130 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	SYF2	O95926	243 aa	Known RBP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	MT-CYB	P00156	380 aa	Predicted RBP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	HLA-DQB2	P05538	268 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	RHOC	P08134	193 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	DDX6	P26196	483 aa	Known RBP eCLIP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	YBEY	P58557	167 aa	Predicted RBP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	MAX	P61244	160 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	IFI35	P80217	286 aa	Predicted RBP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	C6orf118	Q5T5N4	469 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	MARC1	Q5VT66	337 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	RNF219	Q5W0B1	726 aa	Predicted RBP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	CXorf57	Q6NSI4	855 aa	Known RBP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	ZNF534	Q76KX8	674 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	TRMT10C	Q7L0Y3	403 aa	Known RBP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	IGDCC3	Q8IVU1	814 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	IL12RB2	Q99665	862 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	WDR83	Q9BRX9	315 aa	Known RBP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	MUC3B	Q9H195	1237 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	SFXN1	Q9H9B4	322 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	TBC1D30	Q9Y2I9	924 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091		H3BQF6	201 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	CBX4	O00257	560 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	GFRA2	O00451	464 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	NEBL	O76041	1014 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	PFKL	P17858	780 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	MZF1	P28698	734 aa	Predicted RBP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	MAGEA6	P43360	314 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	ITK	Q08881	620 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	HNRNPD	Q14103	355 aa	Known RBP	10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	SKIDA1	Q1XH10	827 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	CEP85L	Q5SZL2	805 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	DENND2C	Q68D51	928 aa		10.67	□□□□□ -0.7
NECAP1-223	ENST00000640091	EP400NL	Q6ZTU2	488 aa		10.67	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms